Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00200 ATGGAAGATAGCTTTGGAGGCAGTTCCTCGAAGGAACATGACAAGTGCAGCATGAAGGAACAAGACCAGTTGCTGCCAATAGCCAATGTTGGTCGGCTGATGAAGCAGATTTTGCCGCAGAATGCGAAGATCTCGAAGGAAGCAAAAGAGACAATGCAAGAATGTGTGTCGGAGTTCATAAGCTTTGTGACAAGTGAAGCTTCGGAGAAGTGCAGAAAGGAGAGGAGAAAGACAGTGAATGGTGATGACATTTGCTGGGCATTGGCTACGCTAGGATTTGATGACTATGCTGCACCAATCACAAGGTCTATGTGGTTTCTTGCAAGTTGA 330 0.4606 MEDSFGGSSSKEHDKCSMKEQDQLLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAAPITRSMWFLAS 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00200 109 Gene3D Histone, subunit A 12 105 IPR009072 GO:0046982
Viun9g00200 109 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 102 IPR027113 GO:0001228|GO:0006355|GO:0016602
Viun9g00200 109 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 25 88 IPR003958 -
Viun9g00200 109 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Viun9g00200 109 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Viun9g00200 109 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Viun9g00200 109 SUPERFAMILY Histone-fold 21 102 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00200 Viun-Chr9 1183724 1184660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00200 4 104 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.812 3.55e-50 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun9g00200 CBFD_NFYB_HMF 2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00200 K08065 - gmx:102663543 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00200 9 1183724 1184660 Viun9g00200 9 1183724 1184660 ECH
Viun3g05766 3 62948168 62948664 Viun9g00200 9 1183724 1184660 PCT