Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00198 ATGTTTCGCTCCCAAAGCTTGAAACCCCTTTTTCTCTATTCCAAGGGACTCACAACCCCTTTTCCCTCAACACTCTCTCTGAAACTCTTCTCCCTCACTTCGCAACAACACTCATTCACCGTTTCCTACCTCATAGACACCCTTGGCTTCTCACCACAAACCGCTCTCAAGGCTTCCCAGAGAGTTAGCTTCGATACCCCTCAAAAGCCCGACTCAGTCATCGCTTTCTTCAACAAAAATGGATTCACCCAAGCCCACATCAACAACATTGTCAAAAGGTTACCCAACATACTCGCATGCAACGCCGACAAGAGGCTTTCGCCAAAGTTCCAATTTTTACTCTCAAAAGGTGCTTCAGCTTCCGATATCGTTCGCCTCGTTAATAGGTGCCCCAGAATCCTGGGATCCAGCCTCAAGAACAACGTGATCCCCTCCTTCGAATTGGTGAAAAGGTTCCTCCAATCTGACCAGAAAACCATTGATTGTGTTTTCGGTAATAGACCTTTCCTTCAATATAGCGTTGGAGCGCAGAATGTGGACATGTTGCTTGATGTTGGAGTCAAGGACTCCGGCATCGGCTATTTGTTCGGAAGGAGGCCCTCGATACTCTTGTCTACTAACTTGAGTGAGGCAATTGATGAAGTTATGGAAATGGGGTTCGACACTTCCAAGATTACTTTCGCCATTGCCTTGCACGCCAAAAGGGTTGTGTCGAAATCGCGGTGGGACGCGAAAGTTGATGCCTTTAAGATGTGGGGTTGGTCTGAGGAAATGGTTATTGATTCTTTCAGGAAGCATCCCCTCTTAATGTTGACATCCAAAGATAAAATCAATGAGATCATGAGATTTTGGGTTGTTGAATTAGGTTGGGACCCTTTGGCACTTGCCAAAATGCCCAAGATTTTTGGATTCAGTTTGGAGAGAAGGATTGTTCCGAGGTGTTTGGTTGTCCGGTATTTGCTTGTCAAGGGTTTGAGAGAGAAGAGTGCCAACTTGTCCACCCCGTTTGATGTTTCTGAAGAGTTGTTTCTTAAAAATTATGTTATGCGTTTTAAGGAGGAAGCTTCTCAACTGTTGAAGCTTTATCAGGAAAAGAAAGTTTCCAAGAAAACAGGGAGGACGGTGTAG 1128 0.4521 MFRSQSLKPLFLYSKGLTTPFPSTLSLKLFSLTSQQHSFTVSYLIDTLGFSPQTALKASQRVSFDTPQKPDSVIAFFNKNGFTQAHINNIVKRLPNILACNADKRLSPKFQFLLSKGASASDIVRLVNRCPRILGSSLKNNVIPSFELVKRFLQSDQKTIDCVFGNRPFLQYSVGAQNVDMLLDVGVKDSGIGYLFGRRPSILLSTNLSEAIDEVMEMGFDTSKITFAIALHAKRVVSKSRWDAKVDAFKMWGWSEEMVIDSFRKHPLLMLTSKDKINEIMRFWVVELGWDPLALAKMPKIFGFSLERRIVPRCLVVRYLLVKGLREKSANLSTPFDVSEELFLKNYVMRFKEEASQLLKLYQEKKVSKKTGRTV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00198 375 Gene3D Transcription termination factor 3, mitochondrial 164 361 IPR038538 -
Viun9g00198 375 Pfam mTERF 177 343 IPR003690 GO:0003690|GO:0006355
Viun9g00198 375 Pfam mTERF 75 225 IPR003690 GO:0003690|GO:0006355
Viun9g00198 375 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Viun9g00198 375 SMART mt_12 292 326 IPR003690 GO:0003690|GO:0006355
Viun9g00198 375 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Viun9g00198 375 SMART mt_12 193 221 IPR003690 GO:0003690|GO:0006355
Viun9g00198 375 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Viun9g00198 375 PANTHER CGI-12 PROTEIN-RELATED 36 352 IPR003690 GO:0003690|GO:0006355
Viun9g00198 375 FunFam Mitochondrial transcription termination factor-like 138 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00198 Viun-Chr9 1171004 1172504 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun9g00198 mTERF 7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00198 K15032 - gmx:100792944 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05758 3 62932482 62934351 Viun9g00198 9 1171004 1172504 PCT