Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00197 ATGGTTAGAAAGGCACCATGGTTGCTTTCTTGTGACCCCTCCAAAAGGGTATTGCCAAAGTTTGAATTTTTTCTCTCAAAGGGTGTTTCTAGCTCTGAAATTGTTAACCTAGTGAGTAAGTACCCTAGATTTCTGCGTCCAAGCCTGAAGAATCATATACTCCCTACCTATGAATTGATATATAAGTTCTTGCAATCACATGTGAAGACTACTCGTTGTATGTTTGGTAATTCATTTTTCTCTCGCGGGGATCGTCTGGCACGCAACATCAGATTGCTGCTAGAGAATGAAGTGAGAGAATCGAACATTGCAAGATTGCTTGGGAACCATAGTAAGGAGGTGTTCGCCTCAAATGATATAGTTAAGTTGGTGAAGGAAGTAAAGGATTTGGGGTTTGATCCTTCAAAAGCAATTTTTGTTGTAGCGATGATTGCCATAAAAAGGACGAGTCCTTCCCTGTGGAAGGAGAAAGTTGATACCTTCAAGAAATGGGGTTGGTCTGATGAAGCCTTGTCTGAAGCATTTAGGAGGCACCCTCACTGTATGTTGACATCCATCAAAAAAATAAATGTTTTGATGAATCTCTGGGTCAATGAGTTGGGCAGGGATGCTTTGGAACTCGTCCAAGGTCCAAAGATTTTCGGGTTGAGTATGGAAAAGAGAATCATTCCAAGGGCTCGTGTTGTCCAACATTTACTTGCTAAAGGTTTGAGGAAAAGCAGTGCCAGCTTTATTACCCCGATTTGTGTTTCTGAAAAGGTGTTTCTTGAGAGGTTTGTGGCATGTTTTAAGGAGGAATCATGTGAACTATTAAAGCTGTACCAGGAAAATGTTAGTGTTCAAGGATAA 849 0.4087 MVRKAPWLLSCDPSKRVLPKFEFFLSKGVSSSEIVNLVSKYPRFLRPSLKNHILPTYELIYKFLQSHVKTTRCMFGNSFFSRGDRLARNIRLLLENEVRESNIARLLGNHSKEVFASNDIVKLVKEVKDLGFDPSKAIFVVAMIAIKRTSPSLWKEKVDTFKKWGWSDEALSEAFRRHPHCMLTSIKKINVLMNLWVNELGRDALELVQGPKIFGLSMEKRIIPRARVVQHLLAKGLRKSSASFITPICVSEKVFLERFVACFKEESCELLKLYQENVSVQG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00197 282 FunFam Mitochondrial transcription termination factor-like 49 267 - -
Viun9g00197 282 Gene3D Transcription termination factor 3, mitochondrial 62 272 IPR038538 -
Viun9g00197 282 SMART mt_12 204 238 IPR003690 GO:0003690|GO:0006355
Viun9g00197 282 SMART mt_12 35 66 IPR003690 GO:0003690|GO:0006355
Viun9g00197 282 SMART mt_12 172 203 IPR003690 GO:0003690|GO:0006355
Viun9g00197 282 SMART mt_12 1 30 IPR003690 GO:0003690|GO:0006355
Viun9g00197 282 Pfam mTERF 153 255 IPR003690 GO:0003690|GO:0006355
Viun9g00197 282 Pfam mTERF 2 133 IPR003690 GO:0003690|GO:0006355
Viun9g00197 282 PANTHER CGI-12 PROTEIN-RELATED 1 265 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00197 Viun-Chr9 1167670 1169523 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun9g00197 mTERF 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00197 K15032 - gmx:102663414 361.688