Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00183 ATGCATAGCCCTGAAGGTGAACTTAAAATAAGTTTTGGCTATCAATGCAATAGTGGTAGAGGTATACCTTGCAAAGAAATCAGTAGAACAAGCAGTTTCTCTTGCTTATCCGGTGCTGCCTTAAGTGCAAATGCTACACTTGCCAACACAAATATCTGCAATGGCGTAATAGGAGAAGAAATCCTTCCGAGTTTGGACTCTCCTAAATCGTTTCGAACAGTACCCTCTTCGTCAAGTTTTCCAAAGTTGGACATATTATCATCATCTGTCCATAGTAGTTTTTCAAATCTAAGTTGCAGCCCTTCCACTCCTACTAACATGCTTGAATATGACTCCTGTTCATTAAAATCTATGAGTGCTCCTTCCAGAACTGAAGGTTTTCTTAATGCAATGGATGTTCAAGTTGCTGGAGGAGCGGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGATGGCTCTTCTGTGCAATTTATGATGGCTTCAATGGGAGAGATGCAGCCGACTTTTTGGCGGGTACCCTTTACGACACCATTGTATCTTACTTTAATATGTTAAGTTGTGATTTTGAACCAGATTTCACAAAAGCTTCTGACAATGTGGCTGTGGGTGAATCCTTTCCATATAATTTGGATGATGATAGTCTTATCCTTCAGGAGCATCAATCTCCTTCAAAGTTTAAGGGAAACAATTCTGGTCTTGACTGTTTTGCAAACATTACTCCACCTTCCAAGTCAGAAGCATCCCCTAAATCATTCTCACATAGTACAGTACTTGATGGTCTCCAGCATGTTCTTAGTCAGGTTGAGAATGATTTCTTATGCATGGTTGAGCAGGAAATGGAGGAACGTCCAGATTTAGTTTCTATTGGATCTTGTGTTTTGCTTGTGCTTCTTCATGGTAATGATTTGTATACACTTAATCTCGGTGACAGCAGAGCCGTATTGGCGACATGTTGTACAGATAACAGAGTGAATGGGAATGAAAGATTGAAGGCTATCCAGCTCACGGATTGTCACACTGTTGACAATGAAGCCGAAAGAGCTCGAGTTCTTGCTGATCATCCAGATGATCCTAAAACCATAGTAGCAGGGAAAGTGAAGGGAAAACTGAAGGTTACTCGAGCTTTAGGAGCAGGGTACTTGAAAAAGAAAATTCTGAATGATGCATTAATGGGAATCCTTCGAGTTCCTGATCTTACAAGCCCACCATATATTTCAACTGATCCGTCGTTGAATGTGCACAAAATCTCAGATTCTGACCAATTTGTTATAGTTGCGAGTGATGGTTTATTTGACTTCTTCAGTAATGATGAAGCAGTACAGCTTGTAGAGTCTTATATCTTGAGAAATCCTTTTGGTGATTCAGCAAAATTTCTTATTGAGCAACTAGTTGCAAGAGCAGCTGATTCTGCAGGCTTCAGCATGGAGGAGTTGATGAATGTTCCCGATGGGAGGAGGAGGAAGTACCATGATGATGTGACAGTAATGGTGATCTTCCTTGGCATGAATCAACGGACTTCAAAAGCATCAATTTGCACCTAG 1551 0.4068 MHSPEGELKISFGYQCNSGRGIPCKEISRTSSFSCLSGAALSANATLANTNICNGVIGEEILPSLDSPKSFRTVPSSSSFPKLDILSSSVHSSFSNLSCSPSTPTNMLEYDSCSLKSMSAPSRTEGFLNAMDVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIVSYFNMLSCDFEPDFTKASDNVAVGESFPYNLDDDSLILQEHQSPSKFKGNNSGLDCFANITPPSKSEASPKSFSHSTVLDGLQHVLSQVENDFLCMVEQEMEERPDLVSIGSCVLLVLLHGNDLYTLNLGDSRAVLATCCTDNRVNGNERLKAIQLTDCHTVDNEAERARVLADHPDDPKTIVAGKVKGKLKVTRALGAGYLKKKILNDALMGILRVPDLTSPPYISTDPSLNVHKISDSDQFVIVASDGLFDFFSNDEAVQLVESYILRNPFGDSAKFLIEQLVARAADSAGFSMEELMNVPDGRRRKYHDDVTVMVIFLGMNQRTSKASICT 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00183 516 Gene3D - 97 512 IPR036457 -
Viun9g00183 516 SMART PP2C_4 118 501 IPR001932 -
Viun9g00183 516 SUPERFAMILY PP2C-like 140 504 IPR036457 -
Viun9g00183 516 Pfam Protein phosphatase 2C 272 471 IPR001932 -
Viun9g00183 516 ProSiteProfiles PPM-type phosphatase domain profile. 127 503 IPR001932 -
Viun9g00183 516 CDD PP2Cc 140 503 IPR001932 -
Viun9g00183 516 PANTHER PROTEIN PHOSPHATASE 2C 135 501 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00183 Viun-Chr9 1102309 1105982 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00183 4 513 PP2C-type Phosphatase Gene Family AT3G16560 62.095 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00183 - - gmx:100791404 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00183 9 1102309 1105982 Viun9g00183 9 1102309 1105982 ECH
Viun3g05743 3 62839623 62843134 Viun9g00183 9 1102309 1105982 PCT