Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00181 ATGCAGAACGAGGAAGGACAGATCACTGAGCTTTACATCCCTAGGAAGTGTTCTGCTACAAACAGATTGATTACCGCGAAAGACCATGCTTCGGTTCAGATTAACATTGGGCATGTGGATGAGAATGGTATCTACAATGGTCAATTCTCCACCTTTGCCCTCTGTGGCTTCATCCGTGCTCAGGGTGATGCTGACAGTGCCCTAGATCGCTTGTGGCAGAAGAAGAAAGTTGAAGTTAAGCAACAGTAG 249 0.4659 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHVDENGIYNGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVKQQ 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00181 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
Viun9g00181 82 FunFam 40S ribosomal protein S21 1 81 - -
Viun9g00181 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Viun9g00181 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Viun9g00181 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Viun9g00181 82 Gene3D - 1 81 IPR038579 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00181 Viun-Chr9 1099088 1100754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00181 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 85.185 1.36e-52 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00181 K02971 - gmx:100817753 167.162