Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00144 ATGGCTCAAGAGGGAGGAAACGAAGCCATACCAAAACTCAAAGAGAGAAGCCCAATCCCACAAGATTTCGATGACAAGAGTTACAGCCTCAGCGGAAAAATCATGCTTTCTGCCATCGTTCTACTCTTCTTCATCGTCATTTTAATGCTCTGTCTCCACATCTACGCGCGCTGGTACCTCAGACGCGCGCGCCGCCGTCAGCTCCGCCGCCACCGCGAGCTCCGCCGCACGCAGCTCGTGTTCTACAACGAAGCCGGCACCCCCACCGCGGTCTCCCGCGGCCTCGACGCTGCCGTCCTCGCCTCGCTACCCGTGTTCACTTACGACCCCAGGGAACACCCGGAAAACGCGCCGGAATGCGCGGTTTGCTTGTCGGAATTCGAACTGGGAGAACCGGGTCGGATCTTACCGAAGTGTAACCACAGCTTCCACACAGACTGCATCGACATGTGGTTTCACTCGCACGCCACGTGTCCACTTTGTCGCGCACCGGTCGAGCGCGCTGCCGAACCGGCGGCGGTTGTTATAACTGTTAGTGAACCGGAATCCGGTTCGGGGGAGAACCGAACCGTTTCTACTTCTTGTCCTTCCACTTCGGTTGGCTCTAGGAAATCGACGTTGGTTGGTGTGACCATTGAGGTGCCTCCGCGGGACGAGAATTTGCGCGACGAGAATACGTCGTCGTTTCGGTCGCCGATGAGTCGCATGTTGTCGTTTACGAGGATTCTGAGCAGGGAACGGAGGGGGAACGTGTCCCCGTCGTCTAGCGGTGGTGATTGTAGCTCCGCCGCCCAGTGCGAGGCGGAGCGAGGTGGGCGAGAGGAGACTCAGTGA 834 0.5863 MAQEGGNEAIPKLKERSPIPQDFDDKSYSLSGKIMLSAIVLLFFIVILMLCLHIYARWYLRRARRRQLRRHRELRRTQLVFYNEAGTPTAVSRGLDAAVLASLPVFTYDPREHPENAPECAVCLSEFELGEPGRILPKCNHSFHTDCIDMWFHSHATCPLCRAPVERAAEPAAVVITVSEPESGSGENRTVSTSCPSTSVGSRKSTLVGVTIEVPPRDENLRDENTSSFRSPMSRMLSFTRILSRERRGNVSPSSSGGDCSSAAQCEAERGGREETQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00144 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 170 IPR013083 -
Viun9g00144 277 MobiDBLite consensus disorder prediction 242 277 - -
Viun9g00144 277 MobiDBLite consensus disorder prediction 245 262 - -
Viun9g00144 277 SMART ring_2 120 161 IPR001841 -
Viun9g00144 277 Pfam Ring finger domain 119 162 IPR001841 -
Viun9g00144 277 SUPERFAMILY RING/U-box 100 167 - -
Viun9g00144 277 CDD RING-H2_EL5-like 119 162 - -
Viun9g00144 277 MobiDBLite consensus disorder prediction 181 202 - -
Viun9g00144 277 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Viun9g00144 277 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 25 169 IPR044675 -
Viun9g00144 277 FunFam E3 ubiquitin-protein ligase ATL6 83 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00144 Viun-Chr9 898585 899894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00144 14 274 Rapid Response to Elicitors AT3G16720 48.173 4.73e-67 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00144 - - gmx:100791545 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00144 9 898585 899894 Viun9g00144 9 898585 899894 ECH
Viun3g05711 3 62609110 62610307 Viun9g00144 9 898585 899894 PCT