Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00139 ATGAGTGAAGATAACAATCGCAACCCAAACAGAAGGTTCGCCATTCTTGGCGTCTCTTCGATCCTCCTTGTGGCTGTGGTGGCTGCGGTGGCTGTTACTATAAACCAAGGAGATGAACCTGAAAGTGGAGGTCATATCGTTAGTTCTCAAAGAACAAGTGTAGACCTACTTTGCCTGTCAACAGAATACGCGAAAACATGCAGGAAAAGCCTTAAAAATGTAGCTGCTAAAGGAAACATAGACACGAGGGCTCTGGTGAAAGCTGCGATCAATGCCACGGCGGTGGAACTTCTGAGGCACATAAGCAACTCGTCCCTTTACAAAGACCTGGGGAAGGACAACATGACAAGACAAGCCATGGATATTTGCAAGGAGGTGTTTCAGTATGCGGTTAATGGTATTCAGAAATCTGCTGATACAATAGACAAGTTTGAATACGGGAAGCTGAGTGAATACATGTATGACCTAAAGGTTTGGATCGCGGGGAGTCTCACGCACCAGCACACGTGCTTGGAAGGGTTTGTGAACACGAGCACCAAGGCCGGTGAGACAATGATTAAGGTTTTGAACACCTCTTTGGAGCTTAGCAGCAATGCGTTGGACATGGTGAATGTGATCTCTGGTGTGCTGAAGGACCTTAACATGACCTCGTTTGGGAATAGGAGGCTTCTCTCTCAGGACATACCAGCTTTGAATGATTATCCTCCGTGGTTGAGTGAAGAAAAACGGCGTCTTCTTCAGATGGGAACTGAAACTCCTGATGCAATTGTGTCCCAAGATGGCACTGGCCAGTTTACATCTATCAATGATGCTCTTCGGTCTGTTCCCGCTAACAATGAAAAACCTTTTGTGATTTACGTCAAAGAAGGTGTGTACAAGGAAAATGTTGAAATGACCGTACTAATGACCCATGTCACAATCATCGGAGATGGTCCGACAAAGACCAGATTCAGTGGCAGTTTAAACTACGATGATGGCGTCCAAACCTACAAAACTGCTACTTTTGCGGTTAATGCTCCAAACTTCGTGGCGAAGGATGTTGGATTTGAGAACACGGCAGGGTCCGAGAAACATCAAGCAGTGGCACTGCGAGTAACAGCAGACCAAGCTGCGTTTCTGAACTGCCACATGGACGGGTTCCAAGACACGCTATACGCTCAGTCACAACGCCAATTCTACCGCGATTGCTCGGTGACTGGGACGATTGATTTTGTGTTTGGAGATGCCGTTGGAATGTTCCAAAACTGCAAGCTGATTGTGAAAAAACCGTTGAGCAAACAACAGTGCATGGTGACAGCCGGTGGGAGAGCGAAAGCCGACAGCCCCACAGCCCTAGTTTTCCAAGGTTGTCTGTTCACAGGAGACCCTGATGTGTTTAGCATGCCGGAAAAGGTGACATACCTCGGAAGGCCATGGAGGGCATTCTCTAAGGTGGTGATCATGGATTCCCAGATTGACGACATCTTCATACCAGAAGGGTACATGGGGTGGATGGGAACTGAGTTCATGGACACTTGCACATACTTAGAGTACAATAACAGAGGCATTAATGCAGACACATCACTCAGAGTTAAATGGCCTGGTGTTAGGACTCTAACAGCAGAAGAAGCAGCTTGTTATTATCCTGCAAGGTTCTTTGAACTTGCTAATCCAAATGATGCTAATTGGCTCGTTAGATCTAATGTACCTTTCAACAATGTTGGCCCTGCGACTCCCCAGTAG 1722 0.4681 MSEDNNRNPNRRFAILGVSSILLVAVVAAVAVTINQGDEPESGGHIVSSQRTSVDLLCLSTEYAKTCRKSLKNVAAKGNIDTRALVKAAINATAVELLRHISNSSLYKDLGKDNMTRQAMDICKEVFQYAVNGIQKSADTIDKFEYGKLSEYMYDLKVWIAGSLTHQHTCLEGFVNTSTKAGETMIKVLNTSLELSSNALDMVNVISGVLKDLNMTSFGNRRLLSQDIPALNDYPPWLSEEKRRLLQMGTETPDAIVSQDGTGQFTSINDALRSVPANNEKPFVIYVKEGVYKENVEMTVLMTHVTIIGDGPTKTRFSGSLNYDDGVQTYKTATFAVNAPNFVAKDVGFENTAGSEKHQAVALRVTADQAAFLNCHMDGFQDTLYAQSQRQFYRDCSVTGTIDFVFGDAVGMFQNCKLIVKKPLSKQQCMVTAGGRAKADSPTALVFQGCLFTGDPDVFSMPEKVTYLGRPWRAFSKVVIMDSQIDDIFIPEGYMGWMGTEFMDTCTYLEYNNRGINADTSLRVKWPGVRTLTAEEAACYYPARFFELANPNDANWLVRSNVPFNNVGPATPQ 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00139 573 ProSitePatterns Pectinesterase signature 1. 279 298 IPR018040 -
Viun9g00139 573 SUPERFAMILY Pectin lyase-like 253 545 IPR011050 -
Viun9g00139 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 207 IPR035513 -
Viun9g00139 573 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Viun9g00139 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 208 IPR035513 -
Viun9g00139 573 SMART PMEI_2 49 202 IPR006501 GO:0004857
Viun9g00139 573 Pfam Plant invertase/pectin methylesterase inhibitor 54 202 IPR006501 GO:0004857
Viun9g00139 573 Pfam Pectinesterase 254 546 IPR000070 GO:0030599|GO:0042545
Viun9g00139 573 PANTHER PECTINESTERASE 22 557 - -
Viun9g00139 573 Gene3D - 252 567 IPR012334 -
Viun9g00139 573 FunFam Pectinesterase 50 207 - -
Viun9g00139 573 CDD PMEI-like_3 56 208 - -
Viun9g00139 573 FunFam Pectinesterase 4 251 567 - -
Viun9g00139 573 NCBIfam pectinesterase inhibitor domain 47 206 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00139 Viun-Chr9 886384 888984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00139 4 564 Carbohydrate Esterase AT3G05610 40.422 1.67e-161 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00139 K01051 - gmx:100784682 751.125