Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00133 ATGTGTGGAGGTGCCATTATTTCAGACTTCATTGGTGTCAAGCGTGACCTCAAAGTCGCCGCGGAGCAACTCTGGTCCGAGCTAGACCCTTTCTCCGACCTCCTCGGCTTCGACACCACGGCCCCCGCCGCCGCCGCTACTTCCAAACGCCAACCACCCTTCCCCGTAGTTTCAGACAAAAAGGTGGAATCATGTGCAAAGAAGAAGAAGAGCGTGGGTGCAGGGAAGAAGAGTGAGCGTGCTCGCAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGAAAATGGGCTGCAGAAATAAGGGACCCACACAAGGGTGTCCGCGTCTGGCTCGGCACCTTCCCCACCGCCGAGGAAGCCGCCAGAGCCTACGACGCCGCCGCCATACGCATCCGTGGTGACAAGGCCAAACTCAACTTCCCCGACGACACTCCGCCACCCTCCAAGAAACGCTGCCTCAGCCCCGACCTCCCCCAACAGAGCAGCTCCTCTTCCACCGCACCACCGCCTTCCGCCGTCTCCTACGGCGGAGACAGCAGCGGAGGAGAGGAACTCGACCTCAAGCAACTTGAACTCTTTCTTGGCTTAGAGAATGAGCAGCCTCTGCCCAACAATGGTGTCGTGTGGGACAACGGTTACATTATGGATGACTTGTGGATGCTCGACGACGTCGTTGTGGCCAACCGTAACGTAGTTTATTAG 705 0.5787 MCGGAIISDFIGVKRDLKVAAEQLWSELDPFSDLLGFDTTAPAAAATSKRQPPFPVVSDKKVESCAKKKKSVGAGKKSERARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDAAAIRIRGDKAKLNFPDDTPPPSKKRCLSPDLPQQSSSSSTAPPPSAVSYGGDSSGGEELDLKQLELFLGLENEQPLPNNGVVWDNGYIMDDLWMLDDVVVANRNVVY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00133 234 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Viun9g00133 234 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Viun9g00133 234 Gene3D AP2/ERF domain 85 143 IPR036955 GO:0003700|GO:0006355
Viun9g00133 234 CDD AP2 86 144 IPR001471 GO:0003700|GO:0006355
Viun9g00133 234 PANTHER DNA-BINDING DOMAIN 67 166 IPR044808 GO:0003700|GO:0009873
Viun9g00133 234 MobiDBLite consensus disorder prediction 155 174 - -
Viun9g00133 234 Pfam AP2 domain 85 134 IPR001471 GO:0003700|GO:0006355
Viun9g00133 234 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
Viun9g00133 234 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Viun9g00133 234 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Viun9g00133 234 FunFam Ethylene-responsive transcription factor 2 84 143 - -
Viun9g00133 234 MobiDBLite consensus disorder prediction 138 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00133 Viun-Chr9 825575 827817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00133 1 228 AP2-EREBP Transcription Factor Family AT3G16770 46.067 5.21e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun9g00133 AP2 4.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00133 K09286 - gmx:100817253 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00133 9 825575 827817 Viun9g00133 9 825575 827817 ECH