Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00113 ATGAATCTCAGCAGCGGCAAGGGATCAACTTCAAGTTCTCCCATGAAAACCGGAGACGCCGTCTCCGACCAGTTTCCGGCGGGTCTCAGGGTGATGGTGGTGGACGATGATCCCACTTGCCTCAGGATACTTGAGAGGATGCTGCGTGCTTGTCTCTATGAAGTGACGAAATGCAAGCGAGCTGAGGTTGCATTGTCGCTTCTGAGAGAGAACAAAAACGGGTTTGACATTGTTTTGAGCGATGTGCATATGCCAGACATGGATGGATTCAAGCTTCTGGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATTATGATGTCTGCTGATGATGGAAAAAGTGTTGTGATGAAAGGGGTGACACATGGTGCCTGTGATTATCTGATTAAACCTGTGAGAATCGAGGCTCTGAAGAACATATGGCAGCATGTGATTCGGAAGAGAAAGAACGGGTTGAAAGATGCAGAGCAATCGGGTAGTGTGGAAGAAGGAGATCGTGTTCTAAAAGGGTGTGACGATGGGGATTTTTCATCTTCAGTGAATGAAGGAAAAGGCTCAAAGAAGAGGAGGGATGAGGAGGATGAAGGAGATGAGAGAGATGATTCCTCCACGTTGAAGAAGCCACGAGTTGTTTGGTCTGTTGAGCTTCATCAGCAGTTTATGGCTGCTGTGAATCAACTTGGAATTGATAAAGCAGTTCCTAAGAAGATTCTGGAGTTGATGAATGTTCCTGGTCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGTTTGTATCTTCGAAGACTGAGTGGAGTTTCACAGCAGCAGGGTAACATGAGCAACTCCTTCATGAGCTCACAAGAAGCACCATTTGGGGCAACCTCAATCAGTGGAATTGATCTTCAAACTCTTTCAGTTGCTGCTCAGCTTCCAGCACAAAGTCTAGCCAAGCTTCAAGCAGCGGCACTTGGCAGAACAACTGCTAAAGCAGGTGTGTCTATGCCTCTATCTGATCAGAAAAACCTTTTCAGTTTTGAGAGCCCAAGACTAAGATTTGCAGAAGGGTCACTGCATCATTTAAGCAACAGTAAACCAATAAACTTGCTTCATGGCATTCCTACCAACATGGAGCCAAAACAGCTTGTAAATTTGCACCAATCTACCCAAACCCTTGGTAACTTGAACATGCGAGTCAACGCTCCTGCTGCACAGAACAACCCCTTGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATTCTAAGTGAAAATGCTGATTCTCATGCAACCAGGTTTCCATCATCTTTGGTTCAGCCTACAGTACCAAATGATGTTTTGGGAAATAGAATTACTGGCTCCAGCAACATAACCACTGCTTATAGTACAGTTCCACAAAACTCTTCATTGTTGAGTTTTCCCATCAACCAAACCAATGAAATGTCTTTCGGTAATTTTCCTCTTAGAAGCACTCCGGGTATAACTAGTATTATACCAACTAAATCCATGTTTCATGAAGAAGGTACCTCAGGAATTAAAGGACCTGGTGGATTTGTGTCAAGCTATGACATGTTTAATGAACTCCACCATCAGAAGTCCCATGATTGGGACTTAACAAACACGGGAATGACATATGATTCTTCTCAGCATGCAAATCCTTTACAAGGTAACATTGATGTCTCACCATCAGTTTTAGTCCATCAGGGTTTTCCCTGCATGCAACAACTGTCTGTGCAAACTAGAGATTCCACTTCAATTGGAAAACCTCTGTTCTCCTCCACTGGGGAAGCCATACATCAAAGTAATCTCCAAAATGTTGGTCAACACCTCAATACCCTTGTTGACAATTCAGTAAGGGTTAAGGCTGAAACATTTCCTGATCCAAGCTCCCAGATTAATAACCTCTTCTCTGATCAGTACGGTCAGGAGGATCTTGTCACTGCATTTCTGAAACAGCAGGAAGGTGTAGGACCATCTGATCATGATTTAGACTTTGATGGATATTCCTTAGACAACATTCCAGTTTAG 2016 0.44 MNLSSGKGSTSSSPMKTGDAVSDQFPAGLRVMVVDDDPTCLRILERMLRACLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNGLKDAEQSGSVEEGDRVLKGCDDGDFSSSVNEGKGSKKRRDEEDEGDERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQGNMSNSFMSSQEAPFGATSISGIDLQTLSVAAQLPAQSLAKLQAAALGRTTAKAGVSMPLSDQKNLFSFESPRLRFAEGSLHHLSNSKPINLLHGIPTNMEPKQLVNLHQSTQTLGNLNMRVNAPAAQNNPLLMQMAQSQPRGQILSENADSHATRFPSSLVQPTVPNDVLGNRITGSSNITTAYSTVPQNSSLLSFPINQTNEMSFGNFPLRSTPGITSIIPTKSMFHEEGTSGIKGPGGFVSSYDMFNELHHQKSHDWDLTNTGMTYDSSQHANPLQGNIDVSPSVLVHQGFPCMQQLSVQTRDSTSIGKPLFSSTGEAIHQSNLQNVGQHLNTLVDNSVRVKAETFPDPSSQINNLFSDQYGQEDLVTAFLKQQEGVGPSDHDLDFDGYSLDNIPV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00113 671 MobiDBLite consensus disorder prediction 152 204 - -
Viun9g00113 671 MobiDBLite consensus disorder prediction 152 172 - -
Viun9g00113 671 PIRSF RR_ARR_type-B 6 662 IPR017053 GO:0003677|GO:0003700|GO:0009736
Viun9g00113 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 302 IPR045279 GO:0009736
Viun9g00113 671 Gene3D - 204 266 - -
Viun9g00113 671 MobiDBLite consensus disorder prediction 182 204 - -
Viun9g00113 671 ProSiteProfiles Response regulatory domain profile. 30 145 IPR001789 GO:0000160
Viun9g00113 671 CDD REC_typeB_ARR-like 31 145 - -
Viun9g00113 671 SMART REC_2 29 141 IPR001789 GO:0000160
Viun9g00113 671 Pfam Response regulator receiver domain 31 139 IPR001789 GO:0000160
Viun9g00113 671 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Viun9g00113 671 FunFam Two-component response regulator 203 266 - -
Viun9g00113 671 SUPERFAMILY CheY-like 28 149 IPR011006 -
Viun9g00113 671 FunFam Two-component response regulator 29 166 - -
Viun9g00113 671 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Viun9g00113 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 263 IPR017930 -
Viun9g00113 671 Gene3D - 29 162 - -
Viun9g00113 671 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00113 Viun-Chr9 703839 707570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00113 63 671 Response Regulator Gene Family AT3G16857 47.496 6.21e-167 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun9g00113 Response_reg 2.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00113 - K14491 gmx:100781087 1108.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00113 9 703839 707570 Viun9g00113 9 703839 707570 ECH
Viun3g05683 3 62433520 62437583 Viun9g00113 9 703839 707570 PCT