Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00099 ATGGCACACGACTTAACGGGGCAGCTTGTGGCTTCAGAGATACATGGGTTTCACACCTTGCAGGATCTGGATGTTAGTAATACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCAAATGAGATTCATGCCATACTCTGTAATCACAAATATTTCAAGATCAAGGCCAAGCCAGTGCATTTGCCCGAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGAAATTTCAGAAAAGATGGGCACAATTGGAAAAAGAAAAACGATGGGAAAACTGTCAAAGAAGCGCACGAACACTTAAAAGTTGGCAATGAAGAAAGGATCCATGTATACTACGCACATGGCCAAGATAACCCAACCTTCGTCCGTAGATGTTATTGGTTGCTTGATAAGAGTTTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACGAGAGATACAATTGCAAAGTTCTCCTGTTACACCTGTAAATTCAAATTCAAGTTCTGTCTCTGATCCAGCTGCATCTTGGATTCCATCAGAAGACTTAGATTCTGGGGCGAAAAGTGCTTACAGTGCTGAGCTTAATGAAGATTTAACAGTCAAAAGTTACGAAGAGAAGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTTGTTTCAAATGTTAACACTTCTACTACATCTAATGGAGGCAATGTTCCTCATTCATATCAACAAAATCAAAGTTTACTTGGTGGAAGCTTTGGCAATGTGTCCAGTACTCCATCAGCAGAAGTTCCTTCTTTAGGCACTTTGGTCAATGAAGGCTTGCAAAGTCAGGACAGCTTTGGAACGTGGATCAACAACATCATATCAGATACACCATGTTCCATAGACGAGTCAGCTCTTGAAACATCAATTTCTACTGTTCGTGAACCATATTCATCACCGGTGGCAGATAATCAGCTATCTTCTCTGCCTGAACATGTATTTAATCTCACAGAGGTGTCCCCTGCTTGGGCATCTTCCACTGAGAAAACAAAGGTCCTGGTTACTGGATATTTTCATAGTAACTATCAACACCTTGCAAAGTTCAACCTAGTGTGTGTCTGTGGTGATGTAAGTTTTCCTGTAGAAATTGTTCAGGTCGGGGTTTACCGATGCTGGGTGCCACCACACTCCCCTGGATTGGTCAATATCTATTTGAGCTTTGATGGCCACAAGCCTATTAGCCATGTTGTTAATTTTGAGTATCGTACACCCATTTTGCATGATCCAACTGCTACAATGGAAGAGAAATACAACTGGAATGAATTTCGACTTCAGATGAGGCTTGCTCATTTGCTCTTTTCTACCGACAAGACCCTTGATATTTTCTCAAATACAGTATCACCAAATGCTCTGAAAGAGGCTAGCAGATTTTCCTTCAGAACATCATTTATCTCCAAAAGCTGGCAATTCTTGATGAAGTCAACTGAGGACCAAACAGCTCCATTTCCACAAGTAAAAGATAGCCTGTTTGAAATTGCATTGAAAAACAAATTAAAGGAATGGCTTTTAGAACGAATTGTTATAGGCAGCAAGAGTACTGAATATGATGCACAAGGCCAAGGTGTAATTCATTTGTGTGCAATGCTTGGATATAGTTGGGCAATCTCCTTATTTTCTTGGTCAGGCTTGTCACTAGATTTCCGCGACAAATTTGGATGGACAGCACTTCATTGGGCAGCTTATTATGGAATGGAGAAAATGGTTGCAACTCTGCTGTCTGCTGGGGCAAGACCAAACCTGGTCACAGATCCTACTCCGAAAAATCCTGGTGGGTTTACTGCTGCTGATCTTGCTTATATGAAGGGCTATGATGGCTTAGCTGCTTACCTTTCCGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTGGCTGGAAACATTAGTGGCACACTGGAAACTAGCTCAACTGATGCAGTAATTACTCAAGAACTTCCTGAGGACCAGCTCTACTTAAAGGACACATTGGCAGCATACCGGACCGCCGCCGGGGCAGCGGCACGCATTCAAGCTGCATATAGGGAGCATGAGCTAAATCTACGGTACAAGAATATTGAATTAAACAGCCCAGAGCATCAAGCACGTCGTATAGTAGCAGCAATGAAGATTCAACACGCCTTTCGCAAGTTTGAGACAAAGAAATCGAATGCAGCTGCTGCTCGAATTCAGCATAGATTCCGGACACGGAAAATCCGTAGAGAATTTCTTCATATGCGGCGCCAGGCTATTAAAATCCAAGCTGCTTTCAGGGGTTTTCAAGTCCGGAGGCAATATAAAAAGATCATATGGTCTGTTGGGGTGCTAGAGAAAGCAATTCTGCGGTGGCGGTTAAAGAGAAAAGGCTTTCGTGGTCTGCAGGTTAATTCTGCTGAAGATGAGAAGCAGGAAGATGGTGCAGAGGAGGAATTCTTTAGGACTGGCCTGAAACAAGCTGAAGAACGTGTGGAGAGGTCGGTGGTACGTGTGCAGGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAATACAGAAGAATGAAGCTAGCACATAGTCAAGCAAAGCTGGATCTGGAATTTGAAGATTTTCTCACTTCTGAAGTTGACATGTTACCTGACATATAG 2619 0.4261 MAHDLTGQLVASEIHGFHTLQDLDVSNTMEEAKSRWLRPNEIHAILCNHKYFKIKAKPVHLPESGTIVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTFVRRCYWLLDKSLEHIVLVHYRETREIQLQSSPVTPVNSNSSSVSDPAASWIPSEDLDSGAKSAYSAELNEDLTVKSYEEKLHEINTLEWDDLVVSNVNTSTTSNGGNVPHSYQQNQSLLGGSFGNVSSTPSAEVPSLGTLVNEGLQSQDSFGTWINNIISDTPCSIDESALETSISTVREPYSSPVADNQLSSLPEHVFNLTEVSPAWASSTEKTKVLVTGYFHSNYQHLAKFNLVCVCGDVSFPVEIVQVGVYRCWVPPHSPGLVNIYLSFDGHKPISHVVNFEYRTPILHDPTATMEEKYNWNEFRLQMRLAHLLFSTDKTLDIFSNTVSPNALKEASRFSFRTSFISKSWQFLMKSTEDQTAPFPQVKDSLFEIALKNKLKEWLLERIVIGSKSTEYDAQGQGVIHLCAMLGYSWAISLFSWSGLSLDFRDKFGWTALHWAAYYGMEKMVATLLSAGARPNLVTDPTPKNPGGFTAADLAYMKGYDGLAAYLSEKSLVEQFNDMSLAGNISGTLETSSTDAVITQELPEDQLYLKDTLAAYRTAAGAAARIQAAYREHELNLRYKNIELNSPEHQARRIVAAMKIQHAFRKFETKKSNAAAARIQHRFRTRKIRREFLHMRRQAIKIQAAFRGFQVRRQYKKIIWSVGVLEKAILRWRLKRKGFRGLQVNSAEDEKQEDGAEEEFFRTGLKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAHSQAKLDLEFEDFLTSEVDMLPDI 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00099 872 Gene3D Immunoglobulins 317 412 IPR013783 -
Viun9g00099 872 SMART iq_5 744 766 IPR000048 GO:0005515
Viun9g00099 872 SMART iq_5 821 843 IPR000048 GO:0005515
Viun9g00099 872 SMART iq_5 668 690 IPR000048 GO:0005515
Viun9g00099 872 SMART iq_5 721 743 IPR000048 GO:0005515
Viun9g00099 872 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Viun9g00099 872 ProSiteProfiles Ankyrin repeat profile. 558 590 IPR002110 GO:0005515
Viun9g00099 872 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Viun9g00099 872 ProSiteProfiles Ankyrin repeat region circular profile. 558 586 - -
Viun9g00099 872 SUPERFAMILY E set domains 322 409 IPR014756 -
Viun9g00099 872 SUPERFAMILY Ankyrin repeat 499 620 IPR036770 -
Viun9g00099 872 ProSiteProfiles IQ motif profile. 823 851 IPR000048 GO:0005515
Viun9g00099 872 FunFam calmodulin-binding transcription activator 5 488 628 - -
Viun9g00099 872 Pfam Ankyrin repeats (3 copies) 500 587 IPR002110 GO:0005515
Viun9g00099 872 ProSiteProfiles IQ motif profile. 722 751 IPR000048 GO:0005515
Viun9g00099 872 MobiDBLite consensus disorder prediction 153 174 - -
Viun9g00099 872 Pfam IQ calmodulin-binding motif 747 766 IPR000048 GO:0005515
Viun9g00099 872 SMART CG_1_2 29 146 IPR005559 GO:0003677
Viun9g00099 872 MobiDBLite consensus disorder prediction 153 170 - -
Viun9g00099 872 ProSiteProfiles IQ motif profile. 669 698 IPR000048 GO:0005515
Viun9g00099 872 Gene3D - 719 769 - -
Viun9g00099 872 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 666 772 IPR027417 -
Viun9g00099 872 SMART ANK_2a 597 628 IPR002110 GO:0005515
Viun9g00099 872 SMART ANK_2a 558 587 IPR002110 GO:0005515
Viun9g00099 872 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 851 - -
Viun9g00099 872 Gene3D - 487 627 IPR036770 -
Viun9g00099 872 ProSiteProfiles IQ motif profile. 745 769 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00099 Viun-Chr9 581320 591885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00099 29 855 CAMTA Transcription Factor Family AT3G16940 56.543 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Viun9g00099 Ank_2 1.2e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00099 K21596 - gmx:100819198 1412.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00099 9 581320 591885 Viun9g00099 9 581320 591885 ECH
Viun3g05669 3 62296665 62305247 Viun9g00099 9 581320 591885 PCT