Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00076 ATGGCAAGCAAAACAAAGATTTACATTGTTCTGGAGTTAGTTGATGGGGGAGAGCTATTTGACAAAATAGCTGCAAAGGGGAAACTTGAAGAAGATGAAGCTAGAAATTATTTCCAACAACTTATTAATGCTGTTGACTACTGCCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCGAACAGTGTTCTTAAAGTTTCAGATTTTGGATTGAGTACGTACACGCAGAAAGAGGATGAACTTCTCCGCACTGCATGTGGAACACCAAATTATGTTGCTCCTGAGGTGATTCATAATAAAGGCTATGTTGGTTCTACATCTGATATGTGGTCTTGCGGAGTTATTCTCTTTGTACTTATGGCTGGGTTCATGCCTTTTGATGCACCAACTCCCATGGCTCTGTTCAAGAAAATTGTCAAGGCAGAATTCTCTTGTCCATCATGGTTTCCACCACAGGCAAAGACACTGTTGAAACGCATTCTAGACCCCAACCCTCAAACGAGGATAAAAATTCCTGAGCTCTTGAAAGACGAGTGGTTCAAGAAAGGATACAAACCCACTTCTTTTACTGAAGAGGACCTAAGCGTAGATGATGTAGCTTTCGCCTTCAACGACTCTAATAAAAATCTAGTGACAGGAAAAAAAGTGAAACCCGTCTACATCAACGCTTTTGAGCTCATTTCTAGGTCACAAAGTTTCAATCTTGAGAATTTGTTCGAGATGCAAACGGATGAAGTGAAGCAAGAAACCTGTTTTACTTCACAGTGCCCTGCAATTGAAATTATGCACAAAATTGAAGAAGCAGCGAAGCCCCTGGGATTTATTGTACAAAAGAAAAATTATAAGATGAAGCTGCAAGGTGACCAGAACGGAAGGAAGGGTCACCTTTCGGTGGCCACTGAGGTTTTTGAAGTGGCTCCCTCAGTGCACATGGTGGAGCTGCGAAAGACAGGGGGTGATACACTTGAGTTTCATAAGTTCTACAAAATCTTCTCATCAGGGTTGCAAGACATTGTGTGGCATACAGAAGAAAAGAAGTGA 1062 0.4162 MASKTKIYIVLELVDGGELFDKIAAKGKLEEDEARNYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNSVLKVSDFGLSTYTQKEDELLRTACGTPNYVAPEVIHNKGYVGSTSDMWSCGVILFVLMAGFMPFDAPTPMALFKKIVKAEFSCPSWFPPQAKTLLKRILDPNPQTRIKIPELLKDEWFKKGYKPTSFTEEDLSVDDVAFAFNDSNKNLVTGKKVKPVYINAFELISRSQSFNLENLFEMQTDEVKQETCFTSQCPAIEIMHKIEEAAKPLGFIVQKKNYKMKLQGDQNGRKGHLSVATEVFEVAPSVHMVELRKTGGDTLEFHKFYKIFSSGLQDIVWHTEEKK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00076 353 Pfam NAF domain 225 285 IPR004041 GO:0007165
Viun9g00076 353 FunFam Non-specific serine/threonine protein kinase 222 348 - -
Viun9g00076 353 Gene3D Kinase associated domain 1, KA1 223 348 - -
Viun9g00076 353 SMART serkin_6 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00076 353 Pfam Protein kinase domain 2 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00076 353 FunFam Non-specific serine/threonine protein kinase 14 194 - -
Viun9g00076 353 Gene3D Transferase(Phosphotransferase) domain 1 14 209 - -
Viun9g00076 353 CDD CIPK_C 229 336 - -
Viun9g00076 353 SUPERFAMILY Protein kinase-like (PK-like) 4 198 IPR011009 -
Viun9g00076 353 ProSiteProfiles Protein kinase domain profile. 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00076 353 ProSiteProfiles NAF domain profile. 223 247 IPR018451 GO:0007165
Viun9g00076 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 53 65 IPR008271 GO:0004672|GO:0006468
Viun9g00076 353 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00076 Viun-Chr9 441380 445381 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00076 1 350 CBL-interacting serine-threonine protein kinases AT1G01140 71.508 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun9g00076 Pkinase 5.8e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00076 - - pvu:PHAVU_009G257000g 649.047