Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00064 ATGGCACCTAATGCCACTTTCTTGCTCTCTTTAACATCTTCCTCCTTACCCATATCTTTATTCAACCACAATCTTCATACCCAATTCAGATCTTCTCACAAACTATTCGTTTCCTTTTCCAAGGCTCCGACTTTCTCCTTCACCGCCTCGGCGGCCACGGTGGATAAAGCAAGGGTCGTTCACGGAGGAGAAAACGCGGAGAAAGAAACGTTCAGGCAACCAAGACCAACCGAAGTCTACATCTGCAACCTTCCAAGAAGCTGTGACGTACAGCATCTACTTCATTTGTTCAACCCTCATGGAACCGTACTCTCTGCTCAGGTTTCCCGCAGTGAGACTGGTGAGAGTAGAGGGAGTGCTTATGTCACAATGACATCTATTGACTCAGCAAAAAGGGCAATCGAGGCATTGGATGCATCGGATGTTGGTGGGCGCGAAGTGCTGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGGAGGAATCTTGATACAATGAATTCGTTACCCATGAGAACTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCCAAGTTTACCATGCCTGAAGACCTGAGGCAGCTTTTTGGTAGATTTGGTAACGTGACTAGTGTAAGGGTGTTGCAAGATACGAGACAAGGGAAACAAAGGGTCTATGCGTTTGTCTCCTATCTTTCAGAGAGAGAACGGAATGCTGCACTATCTCTCAATGGAACGGTGCTTTGTGGTCGAATACTTGTGATTAGAGAGCGTGTAAAGAGAGAGGAATAA 780 0.4538 MAPNATFLLSLTSSSLPISLFNHNLHTQFRSSHKLFVSFSKAPTFSFTASAATVDKARVVHGGENAEKETFRQPRPTEVYICNLPRSCDVQHLLHLFNPHGTVLSAQVSRSETGESRGSAYVTMTSIDSAKRAIEALDASDVGGREVLVRFSAEMNPKRRNLDTMNSLPMRTIYYEGPHKLYVGNLSKFTMPEDLRQLFGRFGNVTSVRVLQDTRQGKQRVYAFVSYLSERERNAALSLNGTVLCGRILVIRERVKREE 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00064 259 SMART rrm1_1 78 150 IPR000504 GO:0003723
Viun9g00064 259 SMART rrm1_1 180 252 IPR000504 GO:0003723
Viun9g00064 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 248 IPR000504 GO:0003723
Viun9g00064 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 147 IPR000504 GO:0003723
Viun9g00064 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 256 IPR000504 GO:0003723
Viun9g00064 259 PANTHER OS02G0815200 PROTEIN 23 253 - -
Viun9g00064 259 Gene3D - 164 259 IPR012677 -
Viun9g00064 259 Gene3D - 48 163 IPR012677 -
Viun9g00064 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Viun9g00064 259 SUPERFAMILY RNA-binding domain, RBD 174 257 IPR035979 GO:0003676
Viun9g00064 259 SUPERFAMILY RNA-binding domain, RBD 73 171 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00064 Viun-Chr9 363498 365095 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00064 77 259 Eukaryotic Initiation Factors Gene Family AT3G16380 30.000 2.94e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00064 - - pvu:PHAVU_009G258000g 441.039