Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00063 ATGGCACCTAATGCCACTTTCTTGCTCTCTTTAACATCTTCCTCCTTACCCATATCTTTATTCAACCACAATCTTCATACCCAATTCAGATCTTCTCACAAACTATTCGTTTCCTTTTCCAAGGCTCCGACTTTCTCCTTCACCGCCTCGGCGGCCACGGTGGATAAAGCAAGGGTCGTTCACGGAGGAGAAAACGCGGAGAAAGAAACGTTCAGGCAACCAAGACCAACCGAAGTCTACATCTGCAACCTTCCAAGAAGCTGTGACGTACAGCATCTACTTCATTTGTTCAACCCTCATGGAACCGTACTCTCTGCTCAGGTTTCCCGCAGTGAGACTGGTGAGAGTAGAGGGAGTGCTTATGTCACAATGACATCTATTGACTCAGCAAAAAGGGCAATCGAGGCATTGGATGCATCGGATGTTGGTGGGCGCGAAGTGCTGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGGAGGAATCTTGATACAATGAATTCGTTACCCATGAGAACTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCCAAGTTTACCATGCCTGAAGACCTGAGGCAGCTTTTTGGTAGATTTGGTAACGTGACTAGTGTAAGGGTGTTGCAAGATACGAGACAAGGGAAACAAAGGGTCTATGCGTTTGTCTCCTATCTTTCAGAGAGAGAACGGAATGCTGCACTATCTCTCAATGGTGCTTTGTGGTCGAATACTTGTGATTAG 750 0.4547 MAPNATFLLSLTSSSLPISLFNHNLHTQFRSSHKLFVSFSKAPTFSFTASAATVDKARVVHGGENAEKETFRQPRPTEVYICNLPRSCDVQHLLHLFNPHGTVLSAQVSRSETGESRGSAYVTMTSIDSAKRAIEALDASDVGGREVLVRFSAEMNPKRRNLDTMNSLPMRTIYYEGPHKLYVGNLSKFTMPEDLRQLFGRFGNVTSVRVLQDTRQGKQRVYAFVSYLSERERNAALSLNGALWSNTCD 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00063 249 SMART rrm1_1 78 150 IPR000504 GO:0003723
Viun9g00063 249 SMART rrm1_1 180 249 IPR000504 GO:0003723
Viun9g00063 249 SUPERFAMILY RNA-binding domain, RBD 174 244 IPR035979 GO:0003676
Viun9g00063 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Viun9g00063 249 SUPERFAMILY RNA-binding domain, RBD 73 171 IPR035979 GO:0003676
Viun9g00063 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 249 IPR000504 GO:0003723
Viun9g00063 249 Gene3D - 162 247 IPR012677 -
Viun9g00063 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 242 IPR000504 GO:0003723
Viun9g00063 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 147 IPR000504 GO:0003723
Viun9g00063 249 Gene3D - 48 161 IPR012677 -
Viun9g00063 249 PANTHER OS02G0815200 PROTEIN 23 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00063 Viun-Chr9 363401 365095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00063 79 246 Eukaryotic Initiation Factors Gene Family AT2G23350 28.994 6.37e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00063 - - pvu:PHAVU_009G258000g 409.453