Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00060 ATGAGTGAAGTGGTTGCGGGTGGAAAGGGTGTGATGCAGACTCAGGAGGAACAGAGCAACAATGCCTCCATGGTTCGGTGGGAACGTTTTCTGCCTCGGATGGTGCTCCGGGTGTTGCTTGTGGAAGCTGATGATTCCACTCGACAGATCATTGCTGCACTTCTCCGTAAATGCAGTTACAAAGTTGCCACAGTTTGTGACGGCCTAAAGGCATGGGAGACATTGAAGAACAAAGCATCTGACATAGATCTCATATTAACTGAAGTGGATTTGCCATCAATATCTGGATTTTCACTTCTTAGTTTAATCATGGAGCATGACGTTTGCAAAAACATTCCCGTCATAATGATGTCTTCTCACGATTCAGTTAGCATGGTGTTCAGATGCATGTTAAAAGGTGCAGTTGATTTTCTTATAAAACCTGTTCGCAAGAATGAGCTAAGAAACTTGTGGCAGCATGTGTGGAGAAGGCATGTCATTGAACTTGGTTTTGCTGCAGAAAATCATGCTGCTAGCAATGATTCTAGCGGTTCTGTGGCTTCTACACCAAAAAATAATGAATGCAGCGAGAAAACAAGTGAGGTTCAAGATATTTCACAGCTGAAGAGTTCTTCAAATCTGAGCGATATTGGCACAATTAAGCATGAAAACTCTACAAAATGTGAAAGGGAATCAGATAAACATAATGACAAAGCTGGAGCCAAATCAATATTTATATCAGAAGATGAAGTGTGCAACAAAACTTTTAAACCAACAGGCTTAAGGCCAGGTCAAGGATATGATTTCGGTGAAATGAGAAATCAAGATGAAGTTCTAAGAATAGAGTTGACCAAAACCAATCCTGAGATTAATGCCGATATTCATGGATGCAGTGATGAATTGGAAAGTCCGTCTACTGGGGCCATTGACTTGATTGGTACATTCAAGACACTCCCAAAGAGCACTGATGAAAAATGTTGTTTCAGTAGTGGTAACGTTTCCAAGTTTGACTTTGATACACAATTGGAACTTTCGATAAGATATTTTCCTGGAGGCTCATACAAAGCTGTAGTTGAGGAAAGGCAAATATGGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATGGTAGTAGTAAATTGTTGCAGCCCTTTTGTCCAACACCATCAACTATCTCTGCACAATTAACAAACGTTAGTCATGATTCTCAGAAATCCCGTGAGTTATTTGAAAACGCATCTACTTCTCATCAATATGGTGCAAAAGATCAAATTAAGGAGAAAATCACCACTCCGGATATTGGTCAATCTGGACAAGTTGATCCAAAATTACCGAACAGTCAACTTGGATTCTTTCCTGCTACAGGGGTTACTTATGATCATCACAAGTCAACTGGAAATGAAAATGTCTTCCCCTCTATGCTTTATTCTGAATCAGGTGTCCATCCCATATGGGCTCCAAAATCAGTGTTCCAGAAAGAGAGTTCTCCGCTTCCCACTAGTACTTCCTCCCAGTCTAAGCCTCAAAGTCGCAACTCAAAACATCGTCACTGCTCTGACGATGCAACCCATGCTTCTGATAAAAATGTAAATGACCAAAGCCATTTAGATTTTGAGACAGGGGACTCTCCTGCTGCTAGTCAGACTGCTGATACCGCTCTTTACCATGATACAACAAATCATAATTGTAGTGGTGTATACAGAAGCATTGGCTGCACAAGTGATGGAAATGCTACTTCAGCTAAGGTAACCCAGGACAACCACGAAAGTTTCATTGATATCGGTCACCTCAGTCATGATGGATTCATAGGGACAGATTCTCATCGCACCAGCCAGCGAGAAGCAGCTCTAACAAAGTTTCGACTTAAGCGGAAAGACAGATGCTATGAGAAAAAGGTCCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGGGTGAAAGGACAATTTGTTCGCCAAGTAGACAGTGGTCTTCCGGTATCAGATCTGGGTGGTGATTCCTGA 1986 0.4194 MSEVVAGGKGVMQTQEEQSNNASMVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYKVATVCDGLKAWETLKNKASDIDLILTEVDLPSISGFSLLSLIMEHDVCKNIPVIMMSSHDSVSMVFRCMLKGAVDFLIKPVRKNELRNLWQHVWRRHVIELGFAAENHAASNDSSGSVASTPKNNECSEKTSEVQDISQLKSSSNLSDIGTIKHENSTKCERESDKHNDKAGAKSIFISEDEVCNKTFKPTGLRPGQGYDFGEMRNQDEVLRIELTKTNPEINADIHGCSDELESPSTGAIDLIGTFKTLPKSTDEKCCFSSGNVSKFDFDTQLELSIRYFPGGSYKAVVEERQIWNHSNASAFSRYGSSKLLQPFCPTPSTISAQLTNVSHDSQKSRELFENASTSHQYGAKDQIKEKITTPDIGQSGQVDPKLPNSQLGFFPATGVTYDHHKSTGNENVFPSMLYSESGVHPIWAPKSVFQKESSPLPTSTSSQSKPQSRNSKHRHCSDDATHASDKNVNDQSHLDFETGDSPAASQTADTALYHDTTNHNCSGVYRSIGCTSDGNATSAKVTQDNHESFIDIGHLSHDGFIGTDSHRTSQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVDSGLPVSDLGGDS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00060 661 MobiDBLite consensus disorder prediction 505 527 - -
Viun9g00060 661 ProSiteProfiles CCT domain profile. 605 647 IPR010402 GO:0005515
Viun9g00060 661 SUPERFAMILY CheY-like 36 162 IPR011006 -
Viun9g00060 661 SMART REC_2 36 151 IPR001789 GO:0000160
Viun9g00060 661 CDD psREC_PRR 38 141 - -
Viun9g00060 661 MobiDBLite consensus disorder prediction 632 661 - -
Viun9g00060 661 MobiDBLite consensus disorder prediction 484 538 - -
Viun9g00060 661 PANTHER TWO-COMPONENT RESPONSE REGULATOR 36 387 IPR045279 GO:0009736
Viun9g00060 661 MobiDBLite consensus disorder prediction 171 203 - -
Viun9g00060 661 ProSiteProfiles Response regulatory domain profile. 37 155 IPR001789 GO:0000160
Viun9g00060 661 Pfam CCT motif 605 647 IPR010402 GO:0005515
Viun9g00060 661 Pfam Response regulator receiver domain 38 149 IPR001789 GO:0000160
Viun9g00060 661 Gene3D - 34 241 - -
Viun9g00060 661 MobiDBLite consensus disorder prediction 485 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00060 Viun-Chr9 349770 355384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00060 604 650 Response Regulator Gene Family AT5G24470 89.362 1.18e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Viun9g00060 Response_reg 2.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00060 K12130 - gmx:100779346 1015.76