Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00054 ATGGCAAACCTTCCAAGTTCAAAGCTGAACGGCGAAGAGAAGAAGAAGGAAACAGAAGAAGGAGAAGATGAAGAAAGCTTCTTGCGTGCCATGCAGCTTGTGAACTCTGTGGTGCTACCGATGGCACTGCAATCGGCGACGGAGCTGGGTGTGTTTGAGGTGCTGAAAGAAGCGGGTGAAGGTGCTAAGCTCTCTGCAAAGGATATAGCATCCAAGATTTCCTCCACCAACCCAGAAGCACCCTCAATGCTAGATCGTATTCTCACTCTTTTTTCCTCTCACTCCATTCTTCACTCTTCCCTCGTTTCCGACCACCGTCTCCCTCCCACCTTTCACCGGCTCTACTCCATCACTCCCGTCGCCACATTCTTTGCTCGCAATTCCGACGGGGTTTCATTGGGACCATTGATGGCCTTGCTCCAAGACAAAATCTTCCTGCACAGCTGGAGTGAGCTGAAAGATGCAATTCGGGAGGGGGGTATTCCATTCAACAGGGTCTATGGCACCCATGCTTTTGAGTATCCAAAGTTGGACTCAAGGTTCAACAAAGTTTTCAACACAGCAATGATCAATCACACAACTTTGGTGATGAAGAATGTTCTGGAATCCTACAAAGGTTTTGAGGGCATAAAAAGGCTTGTGGATGTTGGTGGAGGTCTTGGGATTAACATTAACTTGATCACTTCAAAATATCCTTATATCCATGGCATCAATTTCGACTTGCCTCACGTCATTCAAGATGCTCCTTCCTATCCTGGCGTGGAACACGTTGGAGGAGATATGTTTGAAAATGTGCCTAAAGGAGACGCCATATTTATGAAGTGGATACTTCATGATTGGAGTGATGAACAGTGTGTGAAGCTGTTGAAGAATTGCTATGATGCAATTCCTGATGAGGGAAAGGTGATAGTTGTGGAAGCAATTCTTCCAAAAATAGCAGAGACTAACGATGCTTATAAGACAGTTTCACAAATGGATGTTTTGATGATGACTCAAAACCCTGGAGGGAAAGAGCGATCTGAACAAGAGTTCATGGATTTGGCTACTGCAGCTGGATTTAGTGGCATCAGATATGAATGTCATGTCAACCTTTTCTGGGTTATGGAGTTCTTCAAGTAG 1119 0.4522 MANLPSSKLNGEEKKKETEEGEDEESFLRAMQLVNSVVLPMALQSATELGVFEVLKEAGEGAKLSAKDIASKISSTNPEAPSMLDRILTLFSSHSILHSSLVSDHRLPPTFHRLYSITPVATFFARNSDGVSLGPLMALLQDKIFLHSWSELKDAIREGGIPFNRVYGTHAFEYPKLDSRFNKVFNTAMINHTTLVMKNVLESYKGFEGIKRLVDVGGGLGININLITSKYPYIHGINFDLPHVIQDAPSYPGVEHVGGDMFENVPKGDAIFMKWILHDWSDEQCVKLLKNCYDAIPDEGKVIVVEAILPKIAETNDAYKTVSQMDVLMMTQNPGGKERSEQEFMDLATAAGFSGIRYECHVNLFWVMEFFK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00054 372 Gene3D Vaccinia Virus protein VP39 125 372 IPR029063 -
Viun9g00054 372 SUPERFAMILY "Winged helix" DNA-binding domain 21 127 IPR036390 -
Viun9g00054 372 FunFam Caffeic acid 3-O-methyltransferase 7 124 - -
Viun9g00054 372 MobiDBLite consensus disorder prediction 1 24 - -
Viun9g00054 372 PIRSF O-mtase 8 372 IPR016461 GO:0008168
Viun9g00054 372 Pfam Dimerisation domain 41 90 IPR012967 GO:0046983
Viun9g00054 372 FunFam Caffeic acid O-methyltransferase 125 372 - -
Viun9g00054 372 Pfam O-methyltransferase domain 149 354 IPR001077 GO:0008171
Viun9g00054 372 MobiDBLite consensus disorder prediction 9 24 - -
Viun9g00054 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 370 IPR029063 -
Viun9g00054 372 Gene3D - 7 124 IPR036388 -
Viun9g00054 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 372 IPR016461 GO:0008168
Viun9g00054 372 PANTHER O-METHYLTRANSFERASE 30 357 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00054 Viun-Chr9 321496 327541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00054 23 372 Monolignol Biosynthesis Gene Families AT5G54160 54.701 3.37e-142 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00054 K13066 - gmx:100803633 583.948