Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00053 ATGGACGCCTACTCCTCTGGAGAAGAAGTGGTTATTAAGACACGAAAACCATATACTATCACAAAGCAGAGAGAAAGATGGACGGAGGAGGAACATAATAGATTTCTTGAAGCCTTAAAGCTATACGGGCGAGCATGGCAGCGGATAGAAGAGCACATAGGAACAAAGACTGCTGTGCAAATCAGAAGTCACGCTCAGAAATTCTTTTCAAAGGTTGAGAAAGAGGCCTTTGTGAAGGGTGTTCCAATAGGAGAAGCTCTTGACATAGACATTCCCCCTCCAAGGCCAAAAAGAAAACCAAGCAATCCTTATCCCAGAAAGACCAATGCTTCTCTCTCAAAGAATGGAAAGTCTCTCTTTTCACTTCCATCTTCACATGGTAAACAAGCACTGGACTTGGAGAAACAACCACTTCCAGAGAAGCATTCTGTGGAGGACCAAAGCACTTCAAAACTATTTACCATCCTCCAAGACCCACCTGCTTCATCTATATCACTGCCACTCACAAATCCATGTCCCTTGAGGGAGTTTATACCCTCAATAAAAGAGGTAACAACTCCAGATGAATCTTTTATTACTCATGACCTTCAAAATCACGAGTTAGATGACGGAGAGCACAGACAAAACGCTAATGCCACTTGTAAACTCTCTAAGTCCAACAATTCTGGTGCTGTGGAATTGGTTCAAACTGAGAAAACAGATGCTCCTCATTGCGCATTAACACTAGATGCTATGCAAGGAAATCAGAATTACCCGAGACATGTCCCTGTGCACGTTGTTGATGAGAGGTTTAACGGACAACCTAAGATTCTCACAAATTCTGCTGCATCAAACATAAGTGAAAGTCAAAACAACACAGCACGCTCCTCTGTTCATCATCATCAATCGTTTTCTCCTTGTCCTCCCTTCTCACAACACAATCAGGATGATTACCATTCATTTCTTCAGATGTCGTCCACGTTCTCGAGTCTTGTTGTCTCTACCTTGCTGCAAAATCCTGTTGCCCATGCCGCAGCAAGTTTTGCTGCTACCTTTTGGCCCTATGCAAATGCAGAAACTTCCGCCGCAGATTCTCCCGTGTGCACTCCTCCGAGTATGACAGCTATTACAGCAGCCACCGTTGCCGCCGCAACTGCATGGTGGGCTGCCCATGGACTGCTTCCTCTGTGTACTCCACTTCACACACCCTTTGCGTGCCCTCCTGCACCACCCACTGCACCTCCATCCATGGCTCCGACCGAAACACAACACAAAATCCAACACGGAGAGGCTAAGCCAGAAAACCCTCCTCTGCAAGATCAGATACTGGATCCAGAACAATCGGAAGTTCTGCAAGCTCAACACTCGGTTTCGAATTCACCAGGTGTTTCTTCATCGGAATCTGAGGAGAAGGGTGATACCAATGTAAATATCGCATCAAAGGTTACTAATGATGAGATGAACCAAGTTTCTGAGAATCCCGATTCCAACAAAATGAATGCAAGGAAACCTGTAGACCGCTCCTCGTGTGGTTCTAACACAACCTCTAGTGGTGAAGAGACTGAGATACTAGAGAAGGATGAGAAAGAAAAGGAAGAGCCCAACAAACCTGAGACAAACCTTTTAGGTTCTGAGCCTAATAATCGTCGCAGTAGAAGCATTAGCAACCTTACCAATTCTTGGAAGGAGGTCTCTGAGGAGGGTCAGCTCGCCTTTCAGGCGCTATTCTCCAGGGAGGTGTTGCCACAAAGCTTTTCACCCCCTCATGCTTTGGTAAATGCAGATAATCAGATTCACAGCATGAACAAGCAAAACACAGAGTACAAAGATGAGGGAGTGCAGAAAAGTTTGTCATTTGTGAAAGATAATGATGATGAGGAGGGATTGCTAAGCATGGGTCTTGGACAAGGAAAGCAGAAGAGTTGTCGAACAGGGTTTAAACCTTACAAAAGGTGTTCGGTAGAGGCAAAGGAAACCAACCAAGGTGAAGAGAAAGGTCCTAAGAGAATACGGTTGAACGAGGAAGCTTGA 2010 0.4522 MDAYSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKVEKEAFVKGVPIGEALDIDIPPPRPKRKPSNPYPRKTNASLSKNGKSLFSLPSSHGKQALDLEKQPLPEKHSVEDQSTSKLFTILQDPPASSISLPLTNPCPLREFIPSIKEVTTPDESFITHDLQNHELDDGEHRQNANATCKLSKSNNSGAVELVQTEKTDAPHCALTLDAMQGNQNYPRHVPVHVVDERFNGQPKILTNSAASNISESQNNTARSSVHHHQSFSPCPPFSQHNQDDYHSFLQMSSTFSSLVVSTLLQNPVAHAAASFAATFWPYANAETSAADSPVCTPPSMTAITAATVAAATAWWAAHGLLPLCTPLHTPFACPPAPPTAPPSMAPTETQHKIQHGEAKPENPPLQDQILDPEQSEVLQAQHSVSNSPGVSSSESEEKGDTNVNIASKVTNDEMNQVSENPDSNKMNARKPVDRSSCGSNTTSSGEETEILEKDEKEKEEPNKPETNLLGSEPNNRRSRSISNLTNSWKEVSEEGQLAFQALFSREVLPQSFSPPHALVNADNQIHSMNKQNTEYKDEGVQKSLSFVKDNDDEEGLLSMGLGQGKQKSCRTGFKPYKRCSVEAKETNQGEEKGPKRIRLNEEA 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00053 669 SMART sant 23 71 IPR001005 -
Viun9g00053 669 Coils Coil 584 604 - -
Viun9g00053 669 MobiDBLite consensus disorder prediction 88 126 - -
Viun9g00053 669 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Viun9g00053 669 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Viun9g00053 669 MobiDBLite consensus disorder prediction 649 669 - -
Viun9g00053 669 MobiDBLite consensus disorder prediction 434 491 - -
Viun9g00053 669 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Viun9g00053 669 PANTHER SWI/SNF COMPLEX-RELATED 7 573 - -
Viun9g00053 669 MobiDBLite consensus disorder prediction 279 302 - -
Viun9g00053 669 MobiDBLite consensus disorder prediction 513 531 - -
Viun9g00053 669 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Viun9g00053 669 CDD SANT 26 69 IPR001005 -
Viun9g00053 669 MobiDBLite consensus disorder prediction 401 547 - -
Viun9g00053 669 MobiDBLite consensus disorder prediction 104 125 - -
Viun9g00053 669 Gene3D - 26 74 - -
Viun9g00053 669 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Viun9g00053 669 MobiDBLite consensus disorder prediction 533 547 - -
Viun9g00053 669 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Viun9g00053 669 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00053 Viun-Chr9 300273 316986 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun9g00053 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00053 K12133 - gmx:778086 853.973