Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00051 ATGGACGCCTACTCCTCTGGAGAAGAAGTGGTTATTAAGACACGAAAACCATATACTATCACAAAGCAGAGAGAAAGATGGACGGAGGAGGAACATAATAGATTTCTTGAAGCCTTAAAGCTATACGGGCGAGCATGGCAGCGGATAGAAGAGCACATAGGAACAAAGACTGCTGTGCAAATCAGAAGTCACGCTCAGAAATTCTTTTCAAAGGTTGAGAAAGAGGCCTTTGTGAAGGGTGTTCCAATAGGAGAAGCTCTTGACATAGACATTCCCCCTCCAAGGCCAAAAAGAAAACCAAGCAATCCTTATCCCAGAAAGACCAATGCTTCTCTCTCAAAGAATGGAAAGTCTCTCTTTTCACTTCCATCTTCACATGGTAAACAAGCACTGGACTTGGAGAAACAACCACTTCCAGAGCATTCTGTGGAGGACCAAAGCACTTCAAAACTATTTACCATCCTCCAAGACCCACCTGCTTCATCTATATCACTGCCACTCACAAATCCATGTCCCTTGAGGGAGTTTATACCCTCAATAAAAGAGGTAACAACTCCAGATGAATCTTTTATTACTCATGACCTTCAAAATCACGAGTTAGATGACGGAGAGCACAGACAAAACGCTAATGCCACTTGTAAACTCTCTAAGTCCAACAATTCTGGTGCTGTGGAATTGGTTCAAACTGAGAAAACAGATGCTCCTCATTGCGCATTAACACTAGATGCTATGCAAGGAAATCAGAATTACCCGAGACATGTCCCTGTGCACGTTGTTGATGAGAGGTTTAACGGACAACCTAAGATTCTCACAAATTCTGCTGCATCAAACATAAGTGAAAGTCAAAACAACACAGCACGCTCCTCTGTTCATCATCATCAATCGTTTTCTCCTTGTCCTCCCTTCTCACAACACAATCAGGATGATTACCATTCATTTCTTCAGATGTCGTCCACGTTCTCGAGTCTTGTTGTCTCTACCTTGCTGCAAAATCCTGTTGCCCATGCCGCAGCAAGTTTTGCTGCTACCTTTTGGCCCTATGCAAATGCAGAAACTTCCGCCGCAGATTCTCCCGTGTGCACTCCTCCGAGTATGACAGCTATTACAGCAGCCACCGTTGCCGCCGCAACTGCATGGTGGGCTGCCCATGGACTGCTTCCTCTGTGTACTCCACTTCACACACCCTTTGCGTGCCCTCCTGCACCACCCACTGCACCTCCATCCATGGCTCCGACCGAAACACAACACAAAATCCAACACGGAGAGGCTAAGCCAGAAAACCCTCCTCTGCAAGATCAGATACTGGATCCAGAACAATCGGAAGTTCTGCAAGCTCAACACTCGGTTTCGAATTCACCAGGTGTTTCTTCATCGGAATCTGAGGAGAAGGGTGATACCAATGTAAATATCGCATCAAAGGTTACTAATGATGAGATGAACCAAGTTTCTGAGAATCCCGATTCCAACAAAATGAATGCAAGGAAACCTGTAGACCGCTCCTCGTGTGGTTCTAACACAACCTCTAGTGGTGAAGAGACTGAGATACTAGAGAAGGATGAGAAAGAAAAGGAAGAGCCCAACAAACCTGAGACAAACCTTTTAGGTTCTGAGCCTAATAATCGTCGCAGTAGAAGCATTAGCAACCTTACCAATTCTTGGAAGGAGGTCTCTGAGGAGGGTCAGCTCGCCTTTCAGGCGCTATTCTCCAGGGAGGTGTTGCCACAAAGCTTTTCACCCCCTCATGCTTTGGTAAATGCAGATAATCAGATTCACAGCATGAACAAGCAAAACACAGAGTACAAAGATGAGGGAGTGCAGAAAAGTTTGTCATTTGTGAAAGATAATGATGATGAGGAGGGATTGCTAAGCATGGGTCTTGGACAAGGAAAGCAGAAGAGTTGTCGAACAGGGTTTAAACCTTACAAAAGGTGTTCGGTAGAGGCAAAGGAAACCAACCAAGGTGAAGAGAAAGGTCCTAAGAGAATACGGTTGAACGAGGAAGCTTGA 2007 0.4524 MDAYSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKVEKEAFVKGVPIGEALDIDIPPPRPKRKPSNPYPRKTNASLSKNGKSLFSLPSSHGKQALDLEKQPLPEHSVEDQSTSKLFTILQDPPASSISLPLTNPCPLREFIPSIKEVTTPDESFITHDLQNHELDDGEHRQNANATCKLSKSNNSGAVELVQTEKTDAPHCALTLDAMQGNQNYPRHVPVHVVDERFNGQPKILTNSAASNISESQNNTARSSVHHHQSFSPCPPFSQHNQDDYHSFLQMSSTFSSLVVSTLLQNPVAHAAASFAATFWPYANAETSAADSPVCTPPSMTAITAATVAAATAWWAAHGLLPLCTPLHTPFACPPAPPTAPPSMAPTETQHKIQHGEAKPENPPLQDQILDPEQSEVLQAQHSVSNSPGVSSSESEEKGDTNVNIASKVTNDEMNQVSENPDSNKMNARKPVDRSSCGSNTTSSGEETEILEKDEKEKEEPNKPETNLLGSEPNNRRSRSISNLTNSWKEVSEEGQLAFQALFSREVLPQSFSPPHALVNADNQIHSMNKQNTEYKDEGVQKSLSFVKDNDDEEGLLSMGLGQGKQKSCRTGFKPYKRCSVEAKETNQGEEKGPKRIRLNEEA 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00051 668 SMART sant 23 71 IPR001005 -
Viun9g00051 668 MobiDBLite consensus disorder prediction 532 546 - -
Viun9g00051 668 MobiDBLite consensus disorder prediction 88 126 - -
Viun9g00051 668 MobiDBLite consensus disorder prediction 433 490 - -
Viun9g00051 668 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Viun9g00051 668 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Viun9g00051 668 PANTHER SWI/SNF COMPLEX-RELATED 7 572 - -
Viun9g00051 668 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Viun9g00051 668 MobiDBLite consensus disorder prediction 400 546 - -
Viun9g00051 668 MobiDBLite consensus disorder prediction 648 668 - -
Viun9g00051 668 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Viun9g00051 668 CDD SANT 26 69 IPR001005 -
Viun9g00051 668 MobiDBLite consensus disorder prediction 104 125 - -
Viun9g00051 668 Gene3D - 26 74 - -
Viun9g00051 668 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Viun9g00051 668 MobiDBLite consensus disorder prediction 278 301 - -
Viun9g00051 668 MobiDBLite consensus disorder prediction 512 530 - -
Viun9g00051 668 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Viun9g00051 668 Coils Coil 583 603 - -
Viun9g00051 668 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00051 Viun-Chr9 300273 316992 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun9g00051 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00051 K12133 - gmx:778086 847.425