Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00050 ATGTCATCACCTATTCTCATCCTCACTTTTCTTCCACTTCTTCTGTGCTTCCCTTCATTTTCTTCTTCCCTACAACACCAAGGGAAAGAGCTGCTTCCCAACTCCTGCAGTGAAACATGCGGGGACCTCCATGTTCCTTTTCCTTTCTATGTCAACTCTTCTTGTGAGTCAATTTCCAGTGCCTTCCATCTCTCCTGCACAAATTCATCTACCCTTTTCCTCAGAATTGGCTCAGTGAGCTACACAGTCTTCGAATTCTTCCCAGATGGTGTGCTGGTGGACTTTCCCGGCTCATCATCATCATCATCATCCTGTAGACAGTACAATGACTTGAATTCTTTTGGCAGAAGCTTCGCAGGGAAGGACAACTTCGGAGTTTCGGTGGACAATGTTATTGGTCTCTATGACTGTGAGGATTCCTCTCTGTGCAAACCAGATTGTGAAACTATTGACTTGCCTGCTTGTGATGGAAGAAGGGGTGGAGGCTCCCTTGCCTGCTGCTATCCACTCTCCGACCATACCATATGGCATCTCGGAGATGGATTTTCGGTCTTCTCTCAGTTTGGATGCAGGGGAGTTTCTAGTTGGGCCGTTTTGCGAGGCTCAACTTCGGGAAAACGTGGGGTCAAGTTGGAATGGGCGTTGCCCGGAAACTCCTCTCACCAAGTGTGTGCAAGGAATGCTGACATCATCAATGCTACAGCAATCGAAGGAGGAGTCAGATGTGTCTGTCAAAATGGATATGTTGGTGATGGTTTTGCTAATGGAACTGGATGTTTGCAGGCCTGCACAAAGGACGGAAAGGAAGCATATGGAAGTGACTGCAACATCAAAAGACAAGATCAGAGGAAATTTGTTATCATTGCCGGAATCATTGGCCCAGTTCTGATTGTTGCCTCCCTGGTTGCACTATTTTATCTTCTTAAAAGGCCAACAAAACCGGGGATGTTTGACACAGAGCAGGCTTACTATCAAAACATTTCAGTCCCCAAAGCTTGTAAAACTCGACTATTCAGCCTCCAGGAGCTAGAGGAAGCCACTAAAGGTTTTGAAGAGGGTCAAAAACTTGTGCATTCCAACAATGGGACAATTTTTGCTGGAGTTTTGAGGGATGGATCTCACATAGCTGTCCACAAATTACAATGTGAGAAGAAAGACTTGATTCAAGTTCTGTCACAGATCGAGGTTCTGTCTTCTACTGTGCATAGAAACATGGCCCGCATTCTTGGTTGCTGTATTGAATCTGGCAACACTCTAGTAGTTTATGAGTTTCCTTCCAATGGTACTCTTAAGGAACATTTGCATCAAACCAAAGGACAGCAGCAACTTCGTTTAGATTGGTACAGGAGATTGACTATCGCTGCAGAAACAGCTAGCATTCTTGCATTCCTACATTACGAGAACTCTCCTCCCATATTTCACCATAACCTTAAATCTGCATGCATCTTCCTTGACGATGATTATTCTGTCAAGATTGCAGGATTTGGTCTGCTGAACTCCAACTTTTACTATGGTTCTCACTTACATAAGAACCACGAAGGCTTTGGCATCTGCAAAAATGATGTTTATGACATGGGTGTGTTGCTCCTTGAAATCATCTCAGGCTCAAATCGCTTGGATTTACCAACTTCGGCCTTGCAGCATATAAGGGCTGGAAAATTTGAAGAAATTTTTGACCCTTTTCTTTGCTATCATGAACAACCACACTATCGGCAAGAGCAAATGCAGATCGTTGCTGATCTTGCTACAAGATGCCTCTTGTTTGGTGTTGATGGAAGGCTGGGAATGGTTGATGTTGTGAGGGAGTTAGTACACTTGACTAAAGAAAGTCTTGATGGAGGAATTACCAAAGGACCTGCACTGGAAGAGACATTCTCAAATTCAAGCCTTCTTCAGATGATATCAATGTCTCCTGATTCTATGAATGTCCCTTGA 1935 0.4413 MSSPILILTFLPLLLCFPSFSSSLQHQGKELLPNSCSETCGDLHVPFPFYVNSSCESISSAFHLSCTNSSTLFLRIGSVSYTVFEFFPDGVLVDFPGSSSSSSSCRQYNDLNSFGRSFAGKDNFGVSVDNVIGLYDCEDSSLCKPDCETIDLPACDGRRGGGSLACCYPLSDHTIWHLGDGFSVFSQFGCRGVSSWAVLRGSTSGKRGVKLEWALPGNSSHQVCARNADIINATAIEGGVRCVCQNGYVGDGFANGTGCLQACTKDGKEAYGSDCNIKRQDQRKFVIIAGIIGPVLIVASLVALFYLLKRPTKPGMFDTEQAYYQNISVPKACKTRLFSLQELEEATKGFEEGQKLVHSNNGTIFAGVLRDGSHIAVHKLQCEKKDLIQVLSQIEVLSSTVHRNMARILGCCIESGNTLVVYEFPSNGTLKEHLHQTKGQQQLRLDWYRRLTIAAETASILAFLHYENSPPIFHHNLKSACIFLDDDYSVKIAGFGLLNSNFYYGSHLHKNHEGFGICKNDVYDMGVLLLEIISGSNRLDLPTSALQHIRAGKFEEIFDPFLCYHEQPHYRQEQMQIVADLATRCLLFGVDGRLGMVDVVRELVHLTKESLDGGITKGPALEETFSNSSLLQMISMSPDSMNVP 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00050 644 Pfam Protein tyrosine and serine/threonine kinase 353 501 IPR001245 GO:0004672|GO:0006468
Viun9g00050 644 FunFam probably inactive receptor-like protein kinase At2g46850 322 424 - -
Viun9g00050 644 Gene3D Transferase(Phosphotransferase) domain 1 426 514 - -
Viun9g00050 644 Gene3D Transferase(Phosphotransferase) domain 1 515 612 - -
Viun9g00050 644 Gene3D Laminin 216 256 - -
Viun9g00050 644 Pfam Wall-associated receptor kinase galacturonan-binding 36 85 IPR025287 GO:0030247
Viun9g00050 644 SUPERFAMILY Protein kinase-like (PK-like) 332 603 IPR011009 -
Viun9g00050 644 Gene3D Phosphorylase Kinase; domain 1 317 424 - -
Viun9g00050 644 ProSiteProfiles Protein kinase domain profile. 350 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00050 644 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 30 606 IPR045274 GO:0007166
Viun9g00050 644 FunFam Putative WAK-related receptor-like protein kinase family protein 426 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00050 Viun-Chr9 291826 294666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00050 36 606 Receptor kinase-like Gene Family AT2G23450 29.016 4.44e-59 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Viun9g00050 PK_Tyr_Ser-Thr 4.3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00050 - - vra:106760020 1166.37