Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00048 ATGGAGGATGGGAGTAGGGTTCCAGCAGGGGATGACCCCTCTTACTGGCTGGATGCTTGTGAAGACATATCATGTGATTTCATTGATTTTGATGTCTCATCCATAGTTTCAGAGCAGCCTGATAACCCTTCCAATCAGGACTTCTTCGGTGGCATTGATAAGATTTTGGACAGCATAAAAAACGGTGCTGGTCTCCCTCTGAATCATGGCGAACCTGCTTCCAATTCTAATGGCACAGCAGCAGGAGCAGGAGAAGTTTGGTTTCCTTCCAATGCCACTTTAGCGGATGGGGGAAATCATCATGCTCATACTCCTGTTGTTTCTGCTCCAGCTGATGCTGCTTTTGACCATTCTGCTGCTGTTCGGAATAATGGATCGACTAAGATGTCTAATGGGAATGAAGGGGGAGTTTTGGTTAATTGTTCTCAGGAAAGAGGGGTTCTGAATGGTGGCCATGATGTTGATAGCGAAGAAAGGTGCAGCAAAAGGGCTCGGCTTGGTGGCTACAAGAATGAGAGGCCTCATTTTGGCAGAGGTAATTACCAAGGCAAGGAGAGGGAAAGGTGTTTCAATAGTAACAGAAAGAGGCCGCGGGATAGGGATGATGTTGACAGGAGGGACAGGGATGGTGGTGGAAGGAAAAGAGAACATTGTGGTGCTGTTGGCCGGAGGGATGTTAGAGATAGAGATTGGAGGGATAGAGAACCTAGGGGTTACTGGGAGAGAGATAAATTAGGTAACAATGACATGGTCTTTCGCCCAGGCGCCTGGGAACCTGAGCGTAATCGTGAAGAAAAAATGGTCAATGATGTGAAACAAGAGAACAATGGAAAGCTTGATAAGAGATCCGAGGAGGCTAAGGAGAGGGTTCCTGAGGAAAAGGCTAGACAGTATCAATTAGATGTTCTTGACCAGGCAAAGAGAAAAAATACTATAGCTTTCCTTGAAACTGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTCATTAAAAGTATACAAGAGAGTTTGCAGAAGCAAAATAAGAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTTCCATTAGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGAACTGGTTATCAAGTAGGCCACTATTGTGGAGAAATGGGACAGGACTTTTGGGATGCACGAAGGTGGCAGCGTGAATTCGATACCAAACATGTTTTAGTCATGACGGCTCAAATTCTTTTGAACATTTTGAGGCATAGTATAATAAAAATGGAAGCAATCAATCTCTTGATTCTGGATGAGTGCCACCATGCTGTGAAGAAACACCCATATTCACTGGTGATGTCTGAGTTCTACCATATAACTCCCAAAGAGAAGAGACCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTGTCTCTAGCCAAGTAGATTGTGCAATAAAAATTCGCAATCTTGAGAGTAAGCTAGATTCTATAGTTTGCACCATTAAAGATCGTAAGGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTCGAGTATGATAAAGCTGCCAGTTTATGTTATCTACATGAGCAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACTGAAAGCGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTATGCACTTGGTGAACTGGGACAATGGTGTGCATACAAGGTTGCACAATCCTTTTTAGCAGCTTTGCAAAATGATGAAAGGGCCAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTTTCTCTTCTGAAATGCCAACTGTCAGAGGGTGCAGTTTCTGACAAAAATACTGATTTTGATGACTCGGAGAATGGTGTGGCTCAAAGTGTTTCTGAGCATGAAGAGATGGAAGAAGGGGAACTTCCAGACAGTCATGTTGTCTCTGGTGGAGAGCACGTGGACGTCATTATAGGAGCTGCTGTGGCTGATGGCAAGGTGACCCCTAAGGTGCAGGCACTAATAAAAATACTTCTCAAGTATCAGCATACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGGGTTGTTTCTGCATTAGTTCTGCCGAAGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTTAAGTGTGCAAGCTTGATTGGTCACAATAACAGTCAGGAAATGCGAACCCACCAAATGCAAGATACAATTTCCAAATTCCGTGATGGGCGGGTTACCTTGCTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATTCGGCAATGCAATGTTGTTATTCGCTTTGACCTTGCAAAGACTGTTTTGGCATACATTCAATCCAGGGGGCGTGCTAGAAAACCTGGATCTGATTACATCCTGATGGTCGAGAGGGGCAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAGACTTTGCGTAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAGGACACTTCAAGATTGATTTCTGTTGACACCAGGCCTGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTTGTGAGTCTTAACTCTGCTGTAGGTCTTATCCACTTCTACTGCTCTCAGCTACCCAGTGACAGATATTCGATTCTTCGTCCTGAGTTCATTATGGAGAGGCATGAGAAAACAGGAGGTCCCACAGAATATTCTTGCAAGCTTCAACTGCCTTGTAATGCACCATTTGAAAATCTCGAGGGACCAATATGCAGTTCTATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAATTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTGGGGGAGAAAGAGAAAAGGATGAGCAAACTGATGAAGGAGATCCACTTCCAGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAACAATTCCAAATTGCTTCAACTTTACATGTATGCTGTGAAGTGTGAAAATATTGGTCATTCAAAGGATCCGTTTTTGATTCAAGTTTCAAATTTTGCAATACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACCGTGACTACAAAGGCATCTCTTGTCTTTATGGGGTTGATAAATGTCACTGAGAGTCAGCTGGCATCCCTGAAAAGCTTTCATGTAAGATTGATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACACCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGTTTGGCGATAAGTCTGTAGATCCTATGAACCAAATTGACTGGCGTCTGGTTGAGACAATAATTGGAGCCGAAGCATGGAAGAATCCCCTCCAGAAAGCTCGACCAGATGTTTACCTTGGTACTAATGAGAGAACATTAGGTGGAGACAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACATCCCACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTGGTGAAAGCTTCAGGATTGGTTCCTAGTAGAGATTCCATGCAAACACAAAAGCAAATTAATATGACTATCAATGGGAAATTGATGATGGCAGATACCTGTACTAATGCAGAGGATCTGGTAGGGAAAATTGTAACTGCTGCTCATTCGGGGAAGAGGTTTTATGTTGATTCTATACGCTATGACATGTCAGCAGAAAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTTTGGAGTATAGCTCATATGCTGATTACTACAAGCAAAAATATGGAGTTGATTTGATTTACAAGCACCAACCTCTAATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTCTGTCCCCTCGCTTTGAGCACAGTGAAGCACATGAAGGCGAATCTGAAGAGACACATGACAAAACTTATTATGTTTTCCTTCCTCCTGAGTTATGTCTTGTACACCCACTGCCTGGATCACTTGTCCGTGGTGCCCAGAGGTTGCCTTCAATAATGCGGAGGGTTGAAAGTATTCTACTTGCAGTTCAGCTGAAGAATATGATAAACTATCCTGTTCAAACTTCAAAGATCTTGGAAGCCTTGACCGCTGCCTCTTGCCAGGAGACATTCTGCTATGAAAGGGCCGAGCTTCTCGGAGACGCTTACCTGAAATGGGTTGTTAGTCGATTTCTTTTCTTAAAATACCCACAGAAACATGAAGGTCAACTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTATATCAATATGCATTAAGTAGAGGGCTTCAATCATATATTCAGGCAGATCGCTTTGCTCCATCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTCTTTGATGAAGATACCAAGGATGGGGAGTCCTCTTTGTTTGACCAGGAGCGATCCATTTCTAAAACTGAGAAAATGGATTGTCACACAGATGGATTTGATGATGAGATGGAAGATGGCGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTTCTGTCCAGTAAGACACTTGCAGATGTTGTGGAAGCACTGATTGGGGTATATTATGTAGAAGGTGGTAAAAATGCTGCTAATCACCTAATGAAATGGATTGGCATTGAAATAGAGTTTGATCCCGATGCGATGGACTGTGCAAGAAAGCCATTTAATGTTCCAGACAGCATACTCAGGAGTGTTGACTTTGATGCTTTAGAGGGTGCTTTAAATATAAAGTTTAAAGACAAGGGGCTGTTGGTAGAATCCATAACACATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGTTGGAGTTCGTTGGTGATGCTGTATTGGATCATCTTATCACCAGACACTTGTTTTTCACTTACACAAATCTGCCTCCAGGACGTCTCACTGACCTTCGGGCTGCTGCTGTAAATAATGAAAATTTTGCACGTGTTGCAGTTAAACACAACCTTCATGTGCATCTCCGACATGGGTCCAGTGCCCTAGAGAAACAGATTAAAGAATTCGTGAAGGAAGTCCAAGATGAATTGTCAAAGCCAGGTTTTAACTCCTTTGGTCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTAGAATCTATTGCGGGTGCCATTTTTCTTGACAGTGGAAGGGATACTACTGTTGTTTGGAAGGTTTTTCAGCCTCTTCTGCATCCTATGGTTACCCCAGAGACTCTGCCAATGCATCCTGTGCGAGAGCTGCAGGAGCGTTGCCAACAGCAAGCTGAAGGTTTAGAGTATAAAGCAAGTCGTGTTGGCAATTTGGCTACCGTTGAAGTATTCATTGATGGGGTGCAAGTAGGAGCTGCTCAAAATCCACAGAAAAAAATGGCACAAAAATTAGCTGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAGGTGGGAAAAAATCAGGAGAAGAATGAAGAAAGCGGGAAAAAGAATGGAAACCAGTCATTTACTAGGCAAACATTAAATGATATCTGTTTACGAAGAAATTGGCCGATGCCATTCTACAGGTGTGTGAATGAGGGTGGTCCAGCACATGCAAAGAGATTTACATTTGCGGTGCGAGTCAATACTACTGATCGAGGATGGACGGATGAATGTGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCAGCCGTTCTTCTCTTAGAACTACTAAACAAGTTATACGTGAAAAAGATGGAGTGA 5877 0.4349 MEDGSRVPAGDDPSYWLDACEDISCDFIDFDVSSIVSEQPDNPSNQDFFGGIDKILDSIKNGAGLPLNHGEPASNSNGTAAGAGEVWFPSNATLADGGNHHAHTPVVSAPADAAFDHSAAVRNNGSTKMSNGNEGGVLVNCSQERGVLNGGHDVDSEERCSKRARLGGYKNERPHFGRGNYQGKERERCFNSNRKRPRDRDDVDRRDRDGGGRKREHCGAVGRRDVRDRDWRDREPRGYWERDKLGNNDMVFRPGAWEPERNREEKMVNDVKQENNGKLDKRSEEAKERVPEEKARQYQLDVLDQAKRKNTIAFLETGAGKTLIAVLLIKSIQESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHITPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNTDFDDSENGVAQSVSEHEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTHQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKTGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKDEQTDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACNNSKLLQLYMYAVKCENIGHSKDPFLIQVSNFAILFGNELDAEVLSMSMDLFIARTVTTKASLVFMGLINVTESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMFGDKSVDPMNQIDWRLVETIIGAEAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPSRDSMQTQKQINMTINGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKHQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESILLAVQLKNMINYPVQTSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSRGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKTEKMDCHTDGFDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIEIEFDPDAMDCARKPFNVPDSILRSVDFDALEGALNIKFKDKGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRVGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVGKNQEKNEESGKKNGNQSFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYVKKME 1958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00048 1958 Gene3D Ribonuclease III domain 1613 1786 IPR036389 GO:0004525|GO:0006396
Viun9g00048 1958 Gene3D Ribonuclease III domain 1395 1589 IPR036389 GO:0004525|GO:0006396
Viun9g00048 1958 Gene3D paz domain 1252 1371 - -
Viun9g00048 1958 PANTHER DICER-RELATED 1249 1856 - -
Viun9g00048 1958 MobiDBLite consensus disorder prediction 256 291 - -
Viun9g00048 1958 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1876 1949 - -
Viun9g00048 1958 SMART PAZ_2_a_3 1235 1397 IPR003100 GO:0005515
Viun9g00048 1958 FunFam Endoribonuclease Dicer 1 1253 1371 - -
Viun9g00048 1958 Pfam Helicase conserved C-terminal domain 698 815 IPR001650 -
Viun9g00048 1958 CDD DSRM_DCL_plant 1882 1943 - -
Viun9g00048 1958 SMART helicmild6 731 817 IPR001650 -
Viun9g00048 1958 CDD DEXHc_dicer 294 493 - -
Viun9g00048 1958 FunFam Endoribonuclease dicer-like 1 689 851 - -
Viun9g00048 1958 Pfam Type III restriction enzyme, res subunit 301 461 IPR006935 GO:0003677|GO:0005524|GO:0016787
Viun9g00048 1958 Gene3D Dicer dimerisation domain 885 986 IPR038248 -
Viun9g00048 1958 Gene3D - 1882 1952 - -
Viun9g00048 1958 CDD RIBOc 1412 1594 IPR000999 GO:0004525|GO:0006396
Viun9g00048 1958 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1791 1854 IPR014720 -
Viun9g00048 1958 FunFam endoribonuclease Dicer homolog 1 1882 1951 - -
Viun9g00048 1958 SMART DRBM_3 1877 1950 IPR014720 -
Viun9g00048 1958 SMART DRBM_3 1792 1853 IPR014720 -
Viun9g00048 1958 Gene3D - 289 533 IPR027417 -
Viun9g00048 1958 ProSiteProfiles Ribonuclease III family domain profile. 1617 1765 IPR000999 GO:0004525|GO:0006396
Viun9g00048 1958 FunFam Endoribonuclease dicer-like protein 1395 1588 - -
Viun9g00048 1958 SUPERFAMILY RNase III domain-like 1616 1787 IPR036389 GO:0004525|GO:0006396
Viun9g00048 1958 CDD RIBOc 1633 1788 IPR000999 GO:0004525|GO:0006396
Viun9g00048 1958 SMART ultradead3 291 494 IPR014001 -
Viun9g00048 1958 MobiDBLite consensus disorder prediction 251 291 - -
Viun9g00048 1958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 829 IPR027417 -
Viun9g00048 1958 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 890 985 IPR005034 GO:0016891
Viun9g00048 1958 FunFam Endoribonuclease dicer-like 1 885 986 - -
Viun9g00048 1958 CDD PAZ_CAF_like 1226 1375 - -
Viun9g00048 1958 MobiDBLite consensus disorder prediction 1854 1875 - -
Viun9g00048 1958 FunFam Endoribonuclease dicer-like 1 1612 1786 - -
Viun9g00048 1958 FunFam Endoribonuclease dicer-like protein 290 530 - -
Viun9g00048 1958 MobiDBLite consensus disorder prediction 165 225 - -
Viun9g00048 1958 SUPERFAMILY RNase III domain-like 1390 1595 IPR036389 GO:0004525|GO:0006396
Viun9g00048 1958 SUPERFAMILY PAZ domain 1252 1373 IPR036085 GO:0005515
Viun9g00048 1958 ProSitePatterns Ribonuclease III family signature. 1652 1660 IPR000999 GO:0004525|GO:0006396
Viun9g00048 1958 MobiDBLite consensus disorder prediction 643 672 - -
Viun9g00048 1958 CDD SF2_C_dicer 695 825 - -
Viun9g00048 1958 Pfam Ribonuclease III domain 1652 1765 IPR000999 GO:0004525|GO:0006396
Viun9g00048 1958 Pfam Ribonuclease III domain 1430 1576 IPR000999 GO:0004525|GO:0006396
Viun9g00048 1958 SUPERFAMILY dsRNA-binding domain-like 1880 1951 - -
Viun9g00048 1958 MobiDBLite consensus disorder prediction 976 1003 - -
Viun9g00048 1958 MobiDBLite consensus disorder prediction 979 1003 - -
Viun9g00048 1958 SUPERFAMILY dsRNA-binding domain-like 1747 1864 - -
Viun9g00048 1958 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 302 479 IPR014001 -
Viun9g00048 1958 Pfam PAZ domain 1255 1393 IPR003100 GO:0005515
Viun9g00048 1958 MobiDBLite consensus disorder prediction 1854 1869 - -
Viun9g00048 1958 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1876 1951 IPR014720 -
Viun9g00048 1958 Gene3D - 1789 1868 - -
Viun9g00048 1958 ProSiteProfiles Ribonuclease III family domain profile. 1416 1576 IPR000999 GO:0004525|GO:0006396
Viun9g00048 1958 Gene3D - 688 854 IPR027417 -
Viun9g00048 1958 SMART riboneu5 1412 1596 IPR000999 GO:0004525|GO:0006396
Viun9g00048 1958 SMART riboneu5 1632 1788 IPR000999 GO:0004525|GO:0006396
Viun9g00048 1958 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 702 862 IPR001650 -
Viun9g00048 1958 Pfam Dicer dimerisation domain 890 978 - -
Viun9g00048 1958 ProSiteProfiles PAZ domain profile. 1233 1373 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00048 Viun-Chr9 275174 288069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00048 714 857 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 2.06e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00048 K11592 - gmx:100811631 3552.3