Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00044 ATGGACTTGATACAACAAGTTAAAGGCACTTATTCTGATAGCAGGGAGGAAGAGGAGGAAGAGGAAGTGACAGAGATTATTGGTATCACAAGAGAACCGGAAAGCAGCAGGTTACACCACCACCAAGATGCCGCATCCAATTTTGGAAAGAAGCTGGACCTGATGGAGTTGTCACTGGGGAGCAGCAAGGAAGAGGAAGGGGAGGGAAATTTGCAACAAGGAGGAGGAGGAGGAGCGGTTCATCATCATCATCACCATCACCAACAACAGCAACAGCATGAACATCATCATCAACATCATCATGAGGGTCACGGAACCTGTTCAAACACGAAGGAAGTAGTGGAGAAAGAACACATGTTTGACAAAGTGGTGACACCGAGCGATGTGGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGATTCGTCGTCGAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAATGGGAAGGTGTGGCGGTTCAGATATTCGTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTGGATGCAGGTGACATTGTCTCTTTCCAGCGTGGCCTTGGCGATATGTATAGACATAGATTGTACATAGATTGGAGGAGAAGAACCGATCATGCCCATCCCCCCTCTGATCCCTCCGCCTCCCCTTTGTTTCTTCCCTCTATCAGATGGTACTCTCTTCCCGCCACCTCCCCCATCGTCCCACCCCGCTACCACCACGATCATCACTTTCACCACCTCAATTACAACAACCTCTTCACTTTTCAGCACCAACACCAGTACCTTGGTCATGCTCATGCTCACGGTGCTGCCGCTGCCACTGCCACTGCCTCCGCCCATCATCACAGCAACTATGCCGACCATAATTCCGGATCTGGACCTGGCTCACTCTATTACCTCAGGTCCTCCGTGCCGATGGGTACTGCTGCTGATCAAAACTTGGCAGGCAGAGGGAATAACATTGTGCCCATGATCATCGATTCGGTGCCGGTCAACGTCGGTCATCATAATCATCGCCATGGGCATGGGCATGGTGGCATGTCGAGTGGGGGTGGTAGTTCTACCCCAAGTAGTGGAAAACGACTCAGGCTATTTGGGGTGAACATGGAGTGTGCCTCTTCCGGTGAAGATTCCAAAGGGTTGTCTTTGGGTTCGGCAGCGCATGTCGCAGTGGGAAATTCAGTTCCTTCTTCTTCGTCTCTCCAGCAACGCCTGAGGATGCCCCATGAAGAACCCCTTTCTTCTTCAGCAAGGTTCGGTGATCACAAAGGCGGAACCGGAACTTCTCTGCTGTTTGATTTGGATCCCTCCTTGCAGTATCAGCAGTAG 1395 0.514 MDLIQQVKGTYSDSREEEEEEEVTEIIGITREPESSRLHHHQDAASNFGKKLDLMELSLGSSKEEEGEGNLQQGGGGGAVHHHHHHHQQQQQHEHHHQHHHEGHGTCSNTKEVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDMYRHRLYIDWRRRTDHAHPPSDPSASPLFLPSIRWYSLPATSPIVPPRYHHDHHFHHLNYNNLFTFQHQHQYLGHAHAHGAAAATATASAHHHSNYADHNSGSGPGSLYYLRSSVPMGTAADQNLAGRGNNIVPMIIDSVPVNVGHHNHRHGHGHGGMSSGGGSSTPSSGKRLRLFGVNMECASSGEDSKGLSLGSAAHVAVGNSVPSSSSLQQRLRMPHEEPLSSSARFGDHKGGTGTSLLFDLDPSLQYQQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00044 464 MobiDBLite consensus disorder prediction 360 382 - -
Viun9g00044 464 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 83 402 IPR044800 GO:0003700
Viun9g00044 464 MobiDBLite consensus disorder prediction 1 22 - -
Viun9g00044 464 CDD B3_DNA 118 207 IPR003340 GO:0003677
Viun9g00044 464 MobiDBLite consensus disorder prediction 30 47 - -
Viun9g00044 464 ProSiteProfiles B3 DNA-binding domain profile. 120 225 IPR003340 GO:0003677
Viun9g00044 464 FunFam B3 domain-containing protein 113 233 - -
Viun9g00044 464 Gene3D - 113 231 IPR015300 -
Viun9g00044 464 MobiDBLite consensus disorder prediction 30 49 - -
Viun9g00044 464 Pfam B3 DNA binding domain 120 224 IPR003340 GO:0003677
Viun9g00044 464 MobiDBLite consensus disorder prediction 79 100 - -
Viun9g00044 464 SMART B3_2 120 225 IPR003340 GO:0003677
Viun9g00044 464 MobiDBLite consensus disorder prediction 60 108 - -
Viun9g00044 464 SUPERFAMILY DNA-binding pseudobarrel domain 117 223 IPR015300 -
Viun9g00044 464 MobiDBLite consensus disorder prediction 415 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00044 Viun-Chr9 250000 252691 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00044 110 397 RAV Transcription Factor Family AT2G46870 50.000 3.08e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun9g00044 B3 4e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00044 K09287 - gmx:100812161 514.998