Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00037 ATGCCTGGTCGCTGCTGCTATGCCATGCATATTACCCTTATGCCCATTCATTCTTCACCAAGGAACCACCTTAAAGACTCCATCTTTTCCTTCTGGGGATTCGTTCCGATGAGAGCTCCAGCTCCAGCTCCACCTCCCACTTCCACATCAACATCCATCTACATGATTCCCAACTTAATCCTCTCTCTCACTCTCCTCTTTCTTCTTCTTCCTGTTCAAGCCGCCTCCTGTAACCAACTCGATAGAGACTCACTCTTTGCCTTCTCCAGGAACATATCCACTCCTTCTCCTCTCAATTGGTCTGCTTCTGTTGATTGTTGTCTCTGGGAAGGCATTCACTGTGATGACAATTTCAGAGTCGTACATCTGTTGCTACCATCCAGGGCTCTCGCTGGCTTCATCTCCCCATCTCTCACAAATCTCACTGCTCTCTCCCGGCTTGATCTATCCCATAACCGCTTATCCGGTAATCTCCCAGACCAATTTTTCTCACTTCTTAATCACCTGCAGATTCTTGATTTAAGCTACAATCGTCTCTCTGGTGAATTGCCACCCTTTCTTGCTATTGCTAATACCAGTGCCAATACTATCCGGGAGCTTGATCTCTCCAGTAATTTATTCCACGGAAAACTACCACTCTCTCTCCTTCACCACCTGGCAGATGCAGTCGCGGCAGGGACTTTGACATCTTTTAACGTCAGTAACAACAGCTTCACGGGTCAAATCCCCACTTCTCTCCTCTGCAGTAACAACACTGGCTCATCCTCCTCTCTTAGATTCTTGGACTATTCCTCCAATGATTTCTCTGGCATGATTCAGCCAGGACTAGGAGCATGTTCCAAGCTGGAGAGATTTCGAGCAGGCTCCAATTCCCTATCCGGGCCTCTTCCTGTTGATATTTTCGATGCTGTTTCTCTCAAAGAAATCTCCTTGCCCCTCAATAAACTCAGCGGAACCCTCGGCGAGGCCATTGTTAACCTTGTCAACCTCACAGTTTTGGAGCTCTACTCCAATAATTTCACCGGGCCCATCCCCTCGGATATCGGTAAGCTCTCCAAATTGGAACGTTTACTCCTTCATGCCAACAACATAAATGGCACTCTTCCCCCATCTCTAATGGACTGTGTCAATCTTGTCATGTTGGATGTAAGGCTCAACTTGTTGGAGGGAAGCCTCTCAGCATTGAATTTCTCCGGACTCCTCAGACTCTCGGCACTTGACCTCGGCAACAATAGTTTTACTGGTATTATACCACCGACCATGTATTCCTGCAAATCCCTTAAAGCAGTGAGGCTTGCATCTAATCATTTTGAGGGACAGATCTCACCTGATGTACTTGGACTTCAGTCTCTGGCTTTCCTATCAATTTCTACCAACAACCTCAGCAATGTCACTGGGGCTCTCAGGCTGCTTATGGGACTCAAGAACCTTAGCACTCTTATGCTCTCCCAGAATTTTTTCAATGAAATCATGCCAGATGATGTCAACATAACAAACCCAGATGGATTCCAAAAGATCCAAGTTCTGGGTTTGGGAGGTTGCAATTTCACAGGCCAAATACCACACTGGCTTTATAATCTGAAGAAGCTAGAGGTCTTGGATTTGTCCTATAATCAAATTAGTGGTTCAATTCCTCCTTGGTTGCACACGCTTCCCGAGCTTTTCTACGTAGACTTGTCTTTTAACCTCCTCACAGGAATGTTTCCAACTGAGCTCACAACTCTTCCAGCACTAACATCACAACGGACCTATGACGCAGTAGAAAGGACTTACCTGGAGTTACCCGTGTTCGCTAATGCCAACAATGTTTCTCAGATGCAATACAATCAGATTTCCAACCTACCACCGGCAATATATCTCGGAAACAATAGCCTCAACGGCAGTATCCCGGTAGAGATTGGCAAACTCAGAGTCCTTCATCAGCTGGACCTCAGTAACAACAAATTCTCTGGCAATATCCCAGCGGAAATTTCTAACTTGATTAACTTAGAGAAACTATCCCTCTCAGGAAACCAACTTTCCGGTGAAATTCCCGTTTCACTCACAAGCTTGCATTTTTTGTCTGCTTTCAGTGTAGCATTCAATAATCTTCAAGGGCCGGTACCCACAGGTGGTCAATTTGATACTTTCTCCTTTTCCAGCTTCGAAGGAAACCCACAGTTGTGTGGTTCAGTTGTTCGGCGGTCTTGTCTTCCCCAACAGGGTACTGCTGCACGTGGTCACAGCTCAAGCAAAAAGCTGATAATTGGATTTGCCATTGCAGCCAGTTTTGGGCTTGTTTCCTTGGTTTCAGTGTTGATAGTGTGGGTAATATCCAAGAGGAGGATCAATCCAGGTGGAGACCCTGACAAGATTGAAGTAGAATCAATCTCTATCAACTCTTACAGTGGGGTTCATCCCGAGGTTGACAAAGAGGCGAGCCAAGTGGTGCTGTTCCCTAATAAAACAAGTGAAATCAAGGACCTTACCATGGTTGAAATACTAAAAGCTACTGAAAACTTCAGTCAGGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTGTATAAAGCAACATTACCAAATGGAACTGCTCTGGCCATCAAGAAACTTTCAGGAGATTTGGGTCTCATGGAAAGGGAATTCAAAGCAGAGGTAGAGGCTCTGTCAACAGCACAGCATGAGAATCTGGTTGCATTGCAAGGCTACTGTGTGCATGAGGGTGTTCGGCTTCTCATATACACTTACATGGAAAATGGAAGTCTGGATTACTGGCTGCATGAGAAAACCGATGGTCCATCTCAGATTGATTGGCCTACTAGACTGAAGATTGCACAAGGTGCAAGTTGTGGATTGGCTTACATGCACCAAATATGTGAACCACATATAGTGCATCGTGATATAAAGTCAAGCAATATACTCCTTGATGAAAAGTTTGAGGCACATGTTGCTGATTTTGGTCTGGCCAGACTCATTCTTCCTTATCACACTCACGTCACAACAGAACTTGTAGGAACATTAGGTTACATTCCCCCGGAGTATGGACAAGCATGGGTGGCAACTCTGAGAGGAGATGTGTACAGCTTTGGGGTTGTCATGCTTGAGCTTCTAACTGGAAGAAGGCCTGTTGATGTAAGCAAGCCAAAAATGTCAAGGGAGTTAGTTGCCTGGGTTCAGCAAATGAGGAATGAAGGAAAACAAGATCAAGTCTTTGATCCATTTCTCAGAGCCAAGGGCTTTGAAGAACAGATGCTCAAGGTTCTTGATGTAGCCTGCATGTGTGTCAGCCACAATCCTTTCAAGAGACCCTGCATCCGAGAAGTAGTTGAATGGCTCAGAAATGTTGGATTATCCAACCACCAAATGAATAAAGACTAG 3357 0.4531 MPGRCCYAMHITLMPIHSSPRNHLKDSIFSFWGFVPMRAPAPAPPPTSTSTSIYMIPNLILSLTLLFLLLPVQAASCNQLDRDSLFAFSRNISTPSPLNWSASVDCCLWEGIHCDDNFRVVHLLLPSRALAGFISPSLTNLTALSRLDLSHNRLSGNLPDQFFSLLNHLQILDLSYNRLSGELPPFLAIANTSANTIRELDLSSNLFHGKLPLSLLHHLADAVAAGTLTSFNVSNNSFTGQIPTSLLCSNNTGSSSSLRFLDYSSNDFSGMIQPGLGACSKLERFRAGSNSLSGPLPVDIFDAVSLKEISLPLNKLSGTLGEAIVNLVNLTVLELYSNNFTGPIPSDIGKLSKLERLLLHANNINGTLPPSLMDCVNLVMLDVRLNLLEGSLSALNFSGLLRLSALDLGNNSFTGIIPPTMYSCKSLKAVRLASNHFEGQISPDVLGLQSLAFLSISTNNLSNVTGALRLLMGLKNLSTLMLSQNFFNEIMPDDVNITNPDGFQKIQVLGLGGCNFTGQIPHWLYNLKKLEVLDLSYNQISGSIPPWLHTLPELFYVDLSFNLLTGMFPTELTTLPALTSQRTYDAVERTYLELPVFANANNVSQMQYNQISNLPPAIYLGNNSLNGSIPVEIGKLRVLHQLDLSNNKFSGNIPAEISNLINLEKLSLSGNQLSGEIPVSLTSLHFLSAFSVAFNNLQGPVPTGGQFDTFSFSSFEGNPQLCGSVVRRSCLPQQGTAARGHSSSKKLIIGFAIAASFGLVSLVSVLIVWVISKRRINPGGDPDKIEVESISINSYSGVHPEVDKEASQVVLFPNKTSEIKDLTMVEILKATENFSQANIIGCGGFGLVYKATLPNGTALAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHEGVRLLIYTYMENGSLDYWLHEKTDGPSQIDWPTRLKIAQGASCGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLARLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDVSKPKMSRELVAWVQQMRNEGKQDQVFDPFLRAKGFEEQMLKVLDVACMCVSHNPFKRPCIREVVEWLRNVGLSNHQMNKD 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00037 1118 Gene3D Ribonuclease Inhibitor 78 220 IPR032675 -
Viun9g00037 1118 Pfam Leucine rich repeat N-terminal domain 81 115 IPR013210 -
Viun9g00037 1118 FunFam Receptor-like protein 2 79 195 - -
Viun9g00037 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 956 968 IPR008271 GO:0004672|GO:0006468
Viun9g00037 1118 PRINTS Leucine-rich repeat signature 166 179 - -
Viun9g00037 1118 PRINTS Leucine-rich repeat signature 144 157 - -
Viun9g00037 1118 SUPERFAMILY L domain-like 77 318 - -
Viun9g00037 1118 Pfam Leucine rich repeat 505 564 IPR001611 GO:0005515
Viun9g00037 1118 Pfam Protein kinase domain 835 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00037 1118 SUPERFAMILY L domain-like 252 580 - -
Viun9g00037 1118 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 297 392 - -
Viun9g00037 1118 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 121 246 - -
Viun9g00037 1118 Gene3D Ribonuclease Inhibitor 221 300 IPR032675 -
Viun9g00037 1118 SUPERFAMILY L domain-like 503 724 - -
Viun9g00037 1118 ProSitePatterns Protein kinases ATP-binding region signature. 840 863 IPR017441 GO:0005524
Viun9g00037 1118 FunFam Leucine-rich repeat receptor-like protein kinase 910 1116 - -
Viun9g00037 1118 Gene3D Ribonuclease Inhibitor 398 737 IPR032675 -
Viun9g00037 1118 Gene3D Ribonuclease Inhibitor 301 397 IPR032675 -
Viun9g00037 1118 SMART LRR_typ_2 474 497 IPR003591 -
Viun9g00037 1118 SMART LRR_typ_2 400 424 IPR003591 -
Viun9g00037 1118 SMART LRR_typ_2 660 684 IPR003591 -
Viun9g00037 1118 SMART LRR_typ_2 141 165 IPR003591 -
Viun9g00037 1118 SMART LRR_typ_2 351 375 IPR003591 -
Viun9g00037 1118 SMART LRR_typ_2 166 190 IPR003591 -
Viun9g00037 1118 SMART LRR_typ_2 527 551 IPR003591 -
Viun9g00037 1118 SMART LRR_typ_2 448 470 IPR003591 -
Viun9g00037 1118 SMART LRR_typ_2 636 659 IPR003591 -
Viun9g00037 1118 SMART LRR_typ_2 327 350 IPR003591 -
Viun9g00037 1118 FunFam Tyrosine-sulfated glycopeptide receptor 1 397 735 - -
Viun9g00037 1118 Pfam Leucine Rich repeat 167 182 IPR001611 GO:0005515
Viun9g00037 1118 FunFam Leucine-rich repeat receptor protein kinase MSP1 799 909 - -
Viun9g00037 1118 SUPERFAMILY Protein kinase-like (PK-like) 812 1105 IPR011009 -
Viun9g00037 1118 Gene3D Transferase(Phosphotransferase) domain 1 910 1118 - -
Viun9g00037 1118 ProSiteProfiles Protein kinase domain profile. 834 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00037 1118 ProSiteProfiles Leucine-rich repeat profile. 529 552 IPR001611 GO:0005515
Viun9g00037 1118 Gene3D Phosphorylase Kinase; domain 1 796 909 - -
Viun9g00037 1118 SMART serkin_6 834 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00037 Viun-Chr9 213603 217156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00037 40 768 Miscellaneous Gene Families AT1G17240 50.882 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Viun9g00037 Pkinase 4.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00037 - - gmx:100782574 1854.72