Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00033 ATGGCTGAGGATCTGGATAAACCGTTGCTTGATCCTGAGAATTTCAACCGAGATGGCATTGATTTGGAGCGTATACCATTAGAAGAAGTATTTGAACAGTTGAGAACATCACGAAGAGGACTTTCATCTGACGATGCTGAAGCTCGAATAGAGATATTTGGCCCAAACAAACTTGAAGAGAAGAAAGAGAATAAAATTTTGAAATTTCTTGGTTTTATGTGGAATCCTTTATCATGGGTTATGGAAGCAGCAGCACTGATGGCGATTATCCTTGCTAATGGTGGAGGGGAAGGTCCTGATTGGCAAGACTTTATAGGGATTATATGCCTACTGGTAATAAACTCAACTATTAGTTTTATAGAAGAAAATAATGCAGGTAATGCTGCAGCAGCATTAATGGCTCGTTTAGCTCCTAAAACAAGGGTTCTCAGAGATGGGCAGTGGCAAGAGCAAGATGCAGCAATTTTAGTACCTGGGGATATAATTAGCATAAAATTGGGAGATATAGTTCCAGCTGATGCTCGCTTGCTAGAAGGGGATCCTTTAAAAATTGATCAGTCAGCCCTTACTGGAGAATCTTTACCTGTCACAAAAAGAACTGGTGACGAGGTCTTTTCCGGTTCAACATGTAAACATGGAGAGATTGAGGCTGTAGTGATAGCAACAGGAGTTCATTCCTTTTTTGGAAAGGCAGCATACCTGGTTGATAGTACCGAAGTTGTTGGACATTTTCAGAAGGTCCTTACCTCAATTGGTAACTTCTGCATTTGCTCTATAGCTATAGGGATAATTTTTGAAATAATTATAATGTTCCCAGTGGAGCATCGATCATACAGGGATGGAATCAACAATCTTCTTGTTCTCCTAATTGGAGGAATACCCATCGCTATGCCAACAGTCTTATCTGTAACGCTTGCAATTGGCTCTCACCGTCTTTCTCAGCAGGGAGCCATAACTAAAAGAATGACAGCAATTGAAGAAATGGCAGGCATGGATGTGCTTTGCAGTGACAAAACTGGAACTCTTACACTGAATCGCCTGACTGTTGATAGAAACCTTATTGAGGTTTTTAACAGAAATATGGACAAAGATACGGTTGTTCTACTAGCAGCCAGAGCTGCTAGACTGGAAAACCAGGATGCCATTGATACTGCCGTAGTTAATATGCTAGCTGATCCAAGGGAGGCACGTGCAAACATCACTGAAGTTCATTTTCTACCATTCAATCCTGTAGATAAACGTACAGCTATAACGTATATTGATTCTGATGGCAATTTTTATAGGGCCACTAAAGGAGCTCCGGAACAGATTCTAGATTTGTGTCAAGAGAAAGACCAAATTGCCAAAAGAGTGCACGATATAATAGACAAATTTGCTGAAAGGGGATTGCGATCTCTTGCAGTTGCTTATCAGGAAGTTCCTGAAAAATCCAAGGATAGCCCTGGAGGTCCTTGGACTTTTTGTGGATTGTTGCCTTTGTTTGATCCACCAAGACATGATAGTGCGGAAACCATTCGAAGAGCACTTAACCTTGGAGTCTGTGTAAAGATGATTACAGGTGATCAATTAGCCATTGCAAAGGAGACAGGCCGTAGACTTGGCATGGGAACAAACATGTACCCTTCTTCGTCTTTGTTAGGGCGTGAAAAAGAAGAGCATGAAGTTCTCCCTGTAGATGAGCTCGTTGAGATGGCAGATGGCTTTGCTGGTGTTTATCCTGAAAAGCAACATGTTGTTGGGATGACTGGGGATGGAGTAAATGATGCCCCCGCATTGAAGAAAGCAGATATCGGAATAGCTGTGTCAGACGCTACAGATGCTGCAAGAAGTGCTGCTGATTTGGTCTTAACCGAGCCTGGCTTAAGTGTCATTGTTAGTGCTGTGTTAACAAGCAGAGCTATATTCCAAAGAATGAAAAATTATACAATATATGCTGTCTCCATCACCATAAGAATAGTGGTTGGTTTTACTCTCCTGGCATTAATTTGGGAGTATGATTTTCCACCCTTCATGGTCTTGATCATTGCAATACTAAATGATGGTACCATCATGACCATATCTAAAGACAGAGTGAAGCCATCCCCGACACCTGACAGTTGGAAGCTACCAGAGATATTTGCAACAGGAATAGTGATTGGAACTTATCTTGCTTTGGTCACTGTCCTATTCTATTGGACAATAGTTGAGACCACTTTCTTTGAGACCCACTTCCATGTAAGCTCCTTATCTAGTGACAGCGAGAAAGTTTCATCAGCTGTATATCTGCAAGTTAGCATCATTAGCCAGGCTCTGATCTTTGTTACTCGAAGCTATGGATGGTCATTTCTCGAGAGACCCGGAGCTCTGCTGATGTGCGCCTTTGTAATAGCTCAACTGGTTGCGACCTTAATTGGAGTGTACGCAAATATCAGTTTTGCAAAGATCAGCGGAATTGGATGGGAATGGGCCGGTGTTATATGGTTATACAGTTTGATCTTCTATGTACCCTTGGACATCATTAAGTTCACAGTGCGTTATGCTTTGAGTGGAGATGCCTGGAAACTACTATTTGAAAGAAAGACTGCTTTTACATCAAAGAAAGACTATGGAAAAGAAGACAGAGCTGCAAAGTGGGTTCTTTCTCAGAGGACTCTACAAGGACTGCATCTCATGGCCGGAGGAAGCCTCGAGGTTAACGGAAGGCGCTCTTCTATCATAGCTGAACAAGCCAGACGACGAGCTGAAATAGCCAGGCTGGGAGAGTTGCACACTCTCAGAGGACATGTTGAATCTGTTGTCAGACTCAAAAACTTGCACCGCAATGTCATCCAATCAGCTCATACAGTCTGA 2829 0.4228 MAEDLDKPLLDPENFNRDGIDLERIPLEEVFEQLRTSRRGLSSDDAEARIEIFGPNKLEEKKENKILKFLGFMWNPLSWVMEAAALMAIILANGGGEGPDWQDFIGIICLLVINSTISFIEENNAGNAAAALMARLAPKTRVLRDGQWQEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKRTGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAYLVDSTEVVGHFQKVLTSIGNFCICSIAIGIIFEIIIMFPVEHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFNRNMDKDTVVLLAARAARLENQDAIDTAVVNMLADPREARANITEVHFLPFNPVDKRTAITYIDSDGNFYRATKGAPEQILDLCQEKDQIAKRVHDIIDKFAERGLRSLAVAYQEVPEKSKDSPGGPWTFCGLLPLFDPPRHDSAETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGREKEEHEVLPVDELVEMADGFAGVYPEKQHVVGMTGDGVNDAPALKKADIGIAVSDATDAARSAADLVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVVGFTLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLPEIFATGIVIGTYLALVTVLFYWTIVETTFFETHFHVSSLSSDSEKVSSAVYLQVSIISQALIFVTRSYGWSFLERPGALLMCAFVIAQLVATLIGVYANISFAKISGIGWEWAGVIWLYSLIFYVPLDIIKFTVRYALSGDAWKLLFERKTAFTSKKDYGKEDRAAKWVLSQRTLQGLHLMAGGSLEVNGRRSSIIAEQARRRAEIARLGELHTLRGHVESVVRLKNLHRNVIQSAHTV 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00033 942 ProSitePatterns E1-E2 ATPases phosphorylation site. 337 343 IPR018303 -
Viun9g00033 942 Gene3D - 894 942 - -
Viun9g00033 942 SMART Cation_ATPase_N_a_2 21 93 IPR004014 -
Viun9g00033 942 NCBIfam plasma-membrane proton-efflux P-type ATPase 40 800 IPR006534 GO:0008553|GO:0016020|GO:0120029
Viun9g00033 942 PANTHER CALCIUM-TRANSPORTING ATPASE 24 877 - -
Viun9g00033 942 Pfam E1-E2 ATPase 136 314 - -
Viun9g00033 942 Pfam haloacid dehalogenase-like hydrolase 331 596 - -
Viun9g00033 942 SUPERFAMILY Calcium ATPase, transduction domain A 138 234 IPR008250 -
Viun9g00033 942 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 841 IPR023298 -
Viun9g00033 942 NCBIfam HAD-IC family P-type ATPase 574 663 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g00033 942 NCBIfam HAD-IC family P-type ATPase 107 356 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g00033 942 CDD P-type_ATPase_H 40 835 IPR006534 GO:0008553|GO:0016020|GO:0120029
Viun9g00033 942 PRINTS H+-transporting ATPase (proton pump) signature 613 638 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g00033 942 PRINTS H+-transporting ATPase (proton pump) signature 754 775 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g00033 942 PRINTS H+-transporting ATPase (proton pump) signature 451 469 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g00033 942 PRINTS H+-transporting ATPase (proton pump) signature 582 598 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g00033 942 Gene3D - 138 222 - -
Viun9g00033 942 FunFam Plasma membrane ATPase 487 630 - -
Viun9g00033 942 FunFam Plasma membrane ATPase 347 494 - -
Viun9g00033 942 FunFam ATPase 4 plasma membrane-type 581 809 - -
Viun9g00033 942 Pfam Cation transporter/ATPase, N-terminus 25 87 IPR004014 -
Viun9g00033 942 Gene3D - 100 809 - -
Viun9g00033 942 PRINTS P-type cation-transporting ATPase superfamily signature 185 199 - -
Viun9g00033 942 PRINTS P-type cation-transporting ATPase superfamily signature 582 601 - -
Viun9g00033 942 PRINTS P-type cation-transporting ATPase superfamily signature 335 349 - -
Viun9g00033 942 PRINTS P-type cation-transporting ATPase superfamily signature 605 617 - -
Viun9g00033 942 PRINTS P-type cation-transporting ATPase superfamily signature 489 500 - -
Viun9g00033 942 PRINTS P-type cation-transporting ATPase superfamily signature 511 521 - -
Viun9g00033 942 Gene3D - 347 494 IPR023299 GO:0000166
Viun9g00033 942 SUPERFAMILY HAD-like 331 629 IPR036412 -
Viun9g00033 942 Gene3D - 332 619 IPR023214 -
Viun9g00033 942 FunFam Plasma membrane ATPase 138 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00033 Viun-Chr9 196820 205206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00033 1 942 Primary Pumps ATPases AT1G17260 79.433 0.0 1519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00033 K01535 - gmx:100795836 1622.45