Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00027 ATGGGTGAGCAAACTGACACTCTGGGTGAATCCCCCGCCGTTGAGTTAATCGGAAAGGTAATGATAATCGTTATAATAATCTTCTTCTTCCTTGTTGTGATTGCTCTCGGCGTTCACCTCTTCACAAGAAACTTCTGGTGGCGCGAGCCTGCTCCGCAATCACGGCGCCGCCGCCGCTTTGTGTTTTCCTCCGGTCAAGAGGGTGGTCTTCGAAGGGGACTGGATCCCTCCGTTCTGAGCTCCATTCCCGTGTTGGTATTCCAAGCCCAAGACTTCAAGGAGGGTTTGGAATGTTCGGTTTGCCTCTCGGAGGTGGTGGAAGGAGAAAAGGCCAGGCTTTTGCCCAAATGCAATCATGGGTTTCACGTTGGTTGTATTGACATGTGGTTCCAATCCCATTCTACGTGCCCTCTTTGCAGGAACTCTGTTTCTGCTCAATCAGATGAAAATAACAGTGCACAGAACTCAGAAGCAGAGTCTCCAACTTTTCCCACCAACGTCTTGGTTTGGGGGGATCACAACCAAATAACTTCTACTGGTGCTGCTTCTTTGGAGGAAAGTGCTTCTCAGCCACCTTGTCCCTCCTCGTCCTCTTCCGCTGCTACCTGCGATGATGATGATAGTAACAACAGCAATAGACGTCACGGAACATTGGTTATTGACATACCAAGTGATATCACTTCATCTTCTTTGTCGCCTTCTGCAAACAGGTTTGCTGAAGATGACTTGAAATCGCCAATGACGGGAAGACTGAGATCATTGAAGAGGCTTTTGAGCAGAGACAGAAGGTTAAATCCTTGGAGTCCTACTTCTGTAGATGTAGAACAACAAGCAGCTAATTCAGGGGGAGGAGGACACAGCTGA 864 0.485 MGEQTDTLGESPAVELIGKVMIIVIIIFFFLVVIALGVHLFTRNFWWREPAPQSRRRRRFVFSSGQEGGLRRGLDPSVLSSIPVLVFQAQDFKEGLECSVCLSEVVEGEKARLLPKCNHGFHVGCIDMWFQSHSTCPLCRNSVSAQSDENNSAQNSEAESPTFPTNVLVWGDHNQITSTGAASLEESASQPPCPSSSSSAATCDDDDSNNSNRRHGTLVIDIPSDITSSSLSPSANRFAEDDLKSPMTGRLRSLKRLLSRDRRLNPWSPTSVDVEQQAANSGGGGHS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00027 287 MobiDBLite consensus disorder prediction 213 236 - -
Viun9g00027 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 183 - -
Viun9g00027 287 CDD RING-H2_EL5-like 97 140 - -
Viun9g00027 287 MobiDBLite consensus disorder prediction 264 287 - -
Viun9g00027 287 SMART ring_2 98 139 IPR001841 -
Viun9g00027 287 SUPERFAMILY RING/U-box 78 146 - -
Viun9g00027 287 MobiDBLite consensus disorder prediction 146 166 - -
Viun9g00027 287 FunFam RING-H2 finger protein ATL3 66 145 - -
Viun9g00027 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 150 IPR013083 -
Viun9g00027 287 Pfam Ring finger domain 97 140 IPR001841 -
Viun9g00027 287 MobiDBLite consensus disorder prediction 181 206 - -
Viun9g00027 287 MobiDBLite consensus disorder prediction 243 262 - -
Viun9g00027 287 MobiDBLite consensus disorder prediction 181 287 - -
Viun9g00027 287 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00027 Viun-Chr9 172535 174291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00027 15 265 C3H Transcription Factor Family AT1G53820 42.809 9.26e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00027 - - gmx:100797420 295.049