Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun9g00027 | ATGGGTGAGCAAACTGACACTCTGGGTGAATCCCCCGCCGTTGAGTTAATCGGAAAGGTAATGATAATCGTTATAATAATCTTCTTCTTCCTTGTTGTGATTGCTCTCGGCGTTCACCTCTTCACAAGAAACTTCTGGTGGCGCGAGCCTGCTCCGCAATCACGGCGCCGCCGCCGCTTTGTGTTTTCCTCCGGTCAAGAGGGTGGTCTTCGAAGGGGACTGGATCCCTCCGTTCTGAGCTCCATTCCCGTGTTGGTATTCCAAGCCCAAGACTTCAAGGAGGGTTTGGAATGTTCGGTTTGCCTCTCGGAGGTGGTGGAAGGAGAAAAGGCCAGGCTTTTGCCCAAATGCAATCATGGGTTTCACGTTGGTTGTATTGACATGTGGTTCCAATCCCATTCTACGTGCCCTCTTTGCAGGAACTCTGTTTCTGCTCAATCAGATGAAAATAACAGTGCACAGAACTCAGAAGCAGAGTCTCCAACTTTTCCCACCAACGTCTTGGTTTGGGGGGATCACAACCAAATAACTTCTACTGGTGCTGCTTCTTTGGAGGAAAGTGCTTCTCAGCCACCTTGTCCCTCCTCGTCCTCTTCCGCTGCTACCTGCGATGATGATGATAGTAACAACAGCAATAGACGTCACGGAACATTGGTTATTGACATACCAAGTGATATCACTTCATCTTCTTTGTCGCCTTCTGCAAACAGGTTTGCTGAAGATGACTTGAAATCGCCAATGACGGGAAGACTGAGATCATTGAAGAGGCTTTTGAGCAGAGACAGAAGGTTAAATCCTTGGAGTCCTACTTCTGTAGATGTAGAACAACAAGCAGCTAATTCAGGGGGAGGAGGACACAGCTGA | 864 | 0.485 | MGEQTDTLGESPAVELIGKVMIIVIIIFFFLVVIALGVHLFTRNFWWREPAPQSRRRRRFVFSSGQEGGLRRGLDPSVLSSIPVLVFQAQDFKEGLECSVCLSEVVEGEKARLLPKCNHGFHVGCIDMWFQSHSTCPLCRNSVSAQSDENNSAQNSEAESPTFPTNVLVWGDHNQITSTGAASLEESASQPPCPSSSSSAATCDDDDSNNSNRRHGTLVIDIPSDITSSSLSPSANRFAEDDLKSPMTGRLRSLKRLLSRDRRLNPWSPTSVDVEQQAANSGGGGHS | 287 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun9g00027 | 287 | MobiDBLite | consensus disorder prediction | 213 | 236 | - | - | |
Viun9g00027 | 287 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 16 | 183 | - | - | |
Viun9g00027 | 287 | CDD | RING-H2_EL5-like | 97 | 140 | - | - | |
Viun9g00027 | 287 | MobiDBLite | consensus disorder prediction | 264 | 287 | - | - | |
Viun9g00027 | 287 | SMART | ring_2 | 98 | 139 | IPR001841 | - | |
Viun9g00027 | 287 | SUPERFAMILY | RING/U-box | 78 | 146 | - | - | |
Viun9g00027 | 287 | MobiDBLite | consensus disorder prediction | 146 | 166 | - | - | |
Viun9g00027 | 287 | FunFam | RING-H2 finger protein ATL3 | 66 | 145 | - | - | |
Viun9g00027 | 287 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 76 | 150 | IPR013083 | - | |
Viun9g00027 | 287 | Pfam | Ring finger domain | 97 | 140 | IPR001841 | - | |
Viun9g00027 | 287 | MobiDBLite | consensus disorder prediction | 181 | 206 | - | - | |
Viun9g00027 | 287 | MobiDBLite | consensus disorder prediction | 243 | 262 | - | - | |
Viun9g00027 | 287 | MobiDBLite | consensus disorder prediction | 181 | 287 | - | - | |
Viun9g00027 | 287 | ProSiteProfiles | Zinc finger RING-type profile. | 98 | 140 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun9g00027 | Viun-Chr9 | 172535 | 174291 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun9g00027 | 15 | 265 | C3H Transcription Factor Family | AT1G53820 | 42.809 | 9.26e-65 | 204 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun9g00027 | - | - | gmx:100797420 | 295.049 |