Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00019 ATGTGTGGAGGAGCTATTATCTCTGACTTCATTCCGGCGGCGGTCACTGCCAGGTCTCGCCGGATCACCGCCGGTTACCTGTGGTCGGATTTGAAGAAACGGACATCTGAGGTCATCCACTCCGATGATGACTTCGAGGCTGATTTTAGGGATTTCAAGGACGATTCCGACATCGAAACCGACGTCGACGCCGACCACGAAGTCAAACCCTTTGCTTTCTCCGCCTCTTCTCAGCGGGCAGTGAAATCTGTGGCATTCAATGGTGGAGCTGAGAAGTCTGCAAAGAGAAAGAGGAAGAATCAATATAGGGGAATTCGTCAACGTCCTTGGGGGAAATGGGCAGCTGAAATCAGGGATCCAAGAAAGGGCGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAAGAAGCTTCCGTGAAACGTTCTAAGGTGAATCCACTGGGAAATCGGAAGATTGTTCAACCCAATGTTCACAAGTTCAATGCTGGGAACAATCAGAAGGACCTTCCCTGTCCTATGGACCTGATGGAACAGAAACCCCTAGTTAACCAGTTTGCTGACATGGGTTCATTCCCTGGCAGTGGAAATGGACTCAGATCTCTGCCTTCGAATGATGATGTGACCCTTTACTTCAGTTCAGATCAGGGGAGTAACTCATTTGATTATGCAGATCTTGGGTGGAGTGAAAAGGCCCCCAAAACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATCGCGATTCTCATTTTGCACAGGATGCCAACCATCAGACTAACTCTCAGGATGTGGTATCTATGCAAGATGATTCTTCCAAGACCCTCTCTGAGGAGCTTGTGGATATTGAATCTGAGTTGAAGTTTTTTCAGATGCCTTATCTTGGAGGGAGCTGGGATGATACTTCATTGGAGTCCTTGCTATCTTGTGATACAACCCAGGATGGTGGAAACCTGATGAACCTTTGGAGCTTTGATGACATTCCTTCCATGGCTGGCGGAGTTTTCTGA 1080 0.4824 MCGGAIISDFIPAAVTARSRRITAGYLWSDLKKRTSEVIHSDDDFEADFRDFKDDSDIETDVDADHEVKPFAFSASSQRAVKSVAFNGGAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEASVKRSKVNPLGNRKIVQPNVHKFNAGNNQKDLPCPMDLMEQKPLVNQFADMGSFPGSGNGLRSLPSNDDVTLYFSSDQGSNSFDYADLGWSEKAPKTPEISSMLSAPLDRDSHFAQDANHQTNSQDVVSMQDDSSKTLSEELVDIESELKFFQMPYLGGSWDDTSLESLLSCDTTQDGGNLMNLWSFDDIPSMAGGVF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00019 359 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Viun9g00019 359 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Viun9g00019 359 PANTHER DNA-BINDING DOMAIN 77 298 IPR044808 GO:0003700|GO:0009873
Viun9g00019 359 FunFam Ethylene-responsive transcription factor 2 100 159 - -
Viun9g00019 359 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Viun9g00019 359 SUPERFAMILY DNA-binding domain 101 159 IPR016177 GO:0003677
Viun9g00019 359 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Viun9g00019 359 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Viun9g00019 359 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
Viun9g00019 359 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00019 Viun-Chr9 134545 136704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00019 1 359 AP2-EREBP Transcription Factor Family AT1G53910 45.685 1.84e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun9g00019 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00019 K09286 - gmx:100170723 517.309