Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03180 ATGATGGATAATGAGGTGTTAGAATTTGATATTGGGTTGGGCGGAGGAGGCGAAGGAGAATATGACGATGATGGAGGGGACATCGAACACCCAATGGATGAGGAGGAATTGGGCGATAGCAGTGGAGGTGGTGGTGGTAGTGGTGTAGCCGCCGGAATATACCTTCGAGGGGACCTCTCAGATCTGGAACCCTGCGAGGGCATGGAATTCGAGTCTGAAGAGGCTGCTAAGGCCTTCTACAATTCCTATGCTCGTCGTGTTGGGTTTAGTACACGTGTCAGCTCATCCCGTCGTTCGAGGCGCGATGGAGCTATCATACAGAGGCAATTTGTTTGCGCAAAGGAGGGTTTCCGCAACTTGAATGAGAAGCGCACGAAGGATAGAGAGATCAAGCGTCCCCGAACAATTACCAGAGTCGGATGTAAGGCATCTTTGTCTGTGAAAATGCAAGACTCTGGGAAGTGGGTGGTGTCTGGATTTGTTAGAGAACATAATCACGAACTGGTTCCCCCTGACCAGGTGCATTGCCTTCGCTCTCACAGGCAAATATCGGGAGCTGCCAAGACTCTCATTGATACTTTGCAGGCTGCTGGGATGGGTCCTCGTAGAATTATGTCAGCACTGATTAAAGAGTATGGTGGGATTAGCAAAGTCGGCTTCACAGAGGTCGACTGTAGGAATTACATGAGGAATAATAGGCAGAGAAGTTTAGAAGGGGACATTCAACTTGTTCTCGATTATTTGAGACAAATGCACGCCGAAAACCCTAATTTTTTCTATGCTGTGCAAGGGGATGAAGATCAGTCCATAAACAATGTTTTCTGGGCCGACCCCAAGGCAAGGATGAATTATACATTTTTTGGTGATACTGTAACTTTTGATACTACATACCGATCTAATAGGTATCGCTTACCATTTGCTCCCTTTACTGGTGTAAACCATCATGGACAGCCTGTTCTTTTTGGCTGCGCCTTCCTAATTAATGAATCTGAAGCATCATTTGTGTGGCTTTTCAAGACATGGCTTATGGCCATGTCTGGACGTCCACCAGTGTCAATAACAACTGATCATGATTCTGTAATTCGATCAGCCATAATACAAGTCTTCCCCGAGACCCGGCACCGCTTCTGCAAGTGGCACATCTTTAAAAAATGCCAGGAAAAATTATCCCATATTTTCCTCAAATATCCAAATTTTGAAGCTGAATTTCACAAATGTGTTAACTTGACTGAGTCAATTGAGGAATTTGAGTCTTGCTGGTCAACACTGGTAGATAAATATGATCTCAGGGATCATGAATGGCTTCAAGCAATATATTCTTCTTGCAGGCAGTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAAATGTCAATCACTCAGCGAAGTGATAGCATGAACTCTTACTTTGATGGGTATATAAATGCTTCAACCAATTTAAATCAGTTCTTTAAGCTTTATGAGAAAGCACTTGAAAGTCGCAATGAGAAGGAAGTGAGAGCTGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCATCTCCAATGGAGAAGCAAGCATCTGAGTTTTACACGAGAAAAATTTTCATGAGGTTCCAGGAGGAGTTAGTCGGTACACTAACATTCATGGCATCCAAAGCTGATGATAATGGGGACGTCATTACATATAATGTAGCTAAATTTGGAGAGGAACATAAAGGGTACTACGTTAAATTTAATGTCTTGGAGATGAAAGCAACTTGTAGTTGCCAAATGTTTGAGTTTTCAGGCCTTCTTTGCAGACATGTTTTGGCAGTCTTTAGAGTTACCAATGTGCTTACTCTCCCATCTCCCTATATATTGAAACGTTGGACAAGAAATGCAAAGAGCAATGTAGTACTAGAAGAACATTCTTGTGATGTATATACTTACTATTTGGAATCACATACAGTTAGATATAACACCCTTCGACACGAGGCCTTTAAATTTGTTGATGAAGGTGCACAGTCTGCTGAAACTTACGATGTTGCCATGGATGCTTTACAAGAAGCTGCAAAAAGAGTTTCTCAGGTAATGCAAAATGAGGGAAGAATTCCTATCAGTAATGGAAAATTAAGGAGTCATGTGATGAATGATGAAAGTCATGCTAATTACACAAGTGCATGCCAGGAAGAATGCTTGAGCCAACATACATCTAAGGATGATTTGGATACAAATATTAGAAAGCTTCTGAATGAGCTTGAGTCTGCAAATCGGAAGTGCGAAATTTATCGGTCCAACCTGCTTTCAGTTTTGAAAGCTGTTGAGGATCACAAGCTAGAGCTGTCTGTTAAGGTGGAAAATATCAAAATAAGCATGAAAGATGGTATCTAA 2361 0.421 MMDNEVLEFDIGLGGGGEGEYDDDGGDIEHPMDEEELGDSSGGGGGSGVAAGIYLPXGDLSDLEPCEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLVLDYLRQMHAENPNFFYAVQGDEDQSINNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMSGRPPVSITTDHDSVIRSAIIQVFPETRHRFCKWHIFKKCQEKLSHIFLKYPNFEAEFHKCVNLTESIEEFESCWSTLVDKYDLRDHEWLQAIYSSCRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYINASTNLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMEKQASEFYTRKIFMRFQEELVGTLTFMASKADDNGDVITYNVAKFGEEHKGYYVKFNVLEMKATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSPYILKRWTRNAKSNVVLEEHSCDVYTYYLESHTVRYNTLRHEAFKFVDEGAQSAETYDVAMDALQEAAKRVSQVMQNEGRIPISNGKLRSHVMNDESHANYTSACQEECLSQHTSKDDLDTNIRKLLNELESANRKCEIYRSNLLSVLKAVEDHKLELSVKVENIKISMKDGI 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03180 787 Coils Coil 730 757 - -
Viun8g03180 787 Pfam FAR1 DNA-binding domain 80 171 IPR004330 -
Viun8g03180 787 Pfam MULE transposase domain 292 385 IPR018289 -
Viun8g03180 787 Pfam SWIM zinc finger 567 606 IPR007527 GO:0008270
Viun8g03180 787 SMART 26again6 583 610 IPR006564 GO:0008270
Viun8g03180 787 ProSiteProfiles Zinc finger SWIM-type profile. 572 608 IPR007527 GO:0008270
Viun8g03180 787 MobiDBLite consensus disorder prediction 20 34 - -
Viun8g03180 787 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 61 687 IPR031052 GO:0006355
Viun8g03180 787 MobiDBLite consensus disorder prediction 9 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03180 Viun-Chr8 38245549 38251806 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun8g03180 MULE 2.9e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03180 - - gmx:100793442 1422.53