Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03166 ATGAATCTGCTATTCCTTGCATTCACATTGATCCTATTACATGGATCATCAACAGCAAGAGAAGAAGCTTCCCGACATGACGACGATGATGTCGTCAATATCGGTGCCATATTCACATTGAAAACTATAAACGGCCAAGTTTCCAAAATTGCCATTCAAGCAGCTGAACAAGACGTAAACTCCGATCCCCGCATCCTGGGGGGACGTAAATTGTCCATAAACATCCACGATTCCAAGTTCAGTGGTTTTCTTGGAATCATTGGGGCCCTCAAGTTCTTGATGGCCGATACAGTGGCTATAATCGGTCCACAAACTTCAGGAATGGCCCATGTGCTTTCACATCTCGCCAATGAGGTCCATGTTCCCCTACTCTCCTTCACGGCTCTGGATCCCACCCTGACACCTCTCCAGTATCCTTATTTTGTCCAAACAGCGCCCAGCGATCAGTTCCAGATGACTGCAATTGCGGACATGATTAGTTATTATGGTTGGAGAGAAGTCGTAGCAATATTCAGTGATGATGATCCGGGTCGAAATGGGGTAACTATTTTGGGGGATAAACTTGCTGAAAGACGCTGTAAGTTGTCTTACAAAGCAGTACTTCCTCCCGATACAACCGCCACTCCAAGCTTTATTAACAGTCAGTTAGTGAAGATTAAGAGCATGGAGTCTCGAATAATCGTTTTGCACACCTTCGCCAAAACTGGTCTCTTGGTTTTTGACCTGGCTCAAAAACAAGAAATGATGGCCAAAGGATATGTCTGGATAGCTACTACTTGGTTATCGACTGTTTTAGATTCAGTTCCACTACCTTCAAACACTTCTAACTCAATTCTTGGAGTTCTTACCCTTCGCCCTCACACCCCTCAATCCTTAAAAAAACAGGCATTTATCTCAAGGTGGAAACATTTAAGTAATGGCTCAATTGGGTTAAATCCATACGGACTCTATGCGTATGATTCTGTGTGGACGATTGCTCAGGCACTGAAATTATTCTTTGATCAGAAAGGAAGGGTTTCATTTTCTAACAAAAATTTAACTAGTAAGGGGAAAGAGAATCTGGATCTGGGTGCTTTGAGCGTTTTTGATGGAGGGAAGCAACTACTTGATAACATATTGCGCATTAATATGACTGGTTTGACTGGACCTATTCAGTTTGGTTCAGATAGATCTCCTCCACATCCATCATATGAAATCATTAATGTAATTGCCACAGGTTTTCGGAGCATCGGTTACTGGTCTAATTACTCTGGCCTCTCAGTAATCACCCCTGAGAAACTTCAGTTGAAGCCTGCCAATCGTTCAATTTCAAACCAGCATCTGAAGCCTGTCATATGGCCTGGAAATACTATAGAAATGCCTCGTGGATGGGTTTTCCCTAATAATGGGAGGCAACTAAGAATTGGAGTTCCCAACAGAGTTAGTTATAGAGCCATTGTCTCACAAATAAATGCCTCCAGTGCAGTTCAAGGATATTGCATAGAGATATTCCGAGCTGCCATAAAACTTCTTCCATATGCAGTTCATTATAAGTTCGTTCTGTTTGGAGATGGAAAAAATAACCCAAGCTACTATGATCTTGTCAACATGATTAATCTTGATGTTTTCGATGCTGCTGTAGGTGACATTGCTATTGTCACTGACCGAACAAAGATTGTGGATTTTACTCAACCATATATAGAGTCGGGGCTAGTTGTGGTTGCTCCGGTAAAAAGATTGAAGTCGCATGCTTGGGCTTTCTTGAGACCATTTACTCCAATGATGTGGGGTGTCACTGCATTTTTTTTCCTTTTTGTTGGAACAGTGGTGTGGATTCTTGAACATAGAACGAACGATGACTTTCGGGGGCCGCCAAAGGAACAGATAGTTACAGTTCTTTGGTTTACTTTCTCAACCATGTTCTTTGCGCACAGAGAAAACACAGTGAGTCCACTTGGTCGAATTGTGTTGATAATCTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACTGCAAGCTTGACATCAATTCTCACAGTGCAGCAACTGTCTTCACCCATAACAGGAATTGATAGCTTGATATCCAGCAGTGAACGTATAGGGTTCCAAGTAGGCTCGTTTGCTGCAAACTATCTAACCGAGCAACTCAACATCCCCAGACATAGACTTGTTCCTCTTGGCTCGCCTGAAGAATATGCCATTGCCCTTGAAAGAGGAACAGTTGCAGCAGTGGTGGATGAGCGCCCATATGTAGAACTATTCCTTTCAGACCACTGCAAATTCTCAATCAGGGGCCAAGACTTCACCAAAAGTGGATGGGGATTTGCATTTCCGAGGGGCTCTCCTTTTGCAGTTGATATGTCAACAGCCATTTTAACTTTATCTGAGAATGGTGAACTTCAGAGGATCCATGAAAAGTGGCTTTCAGAAAAGGCTTGTGCTCATCGCAGTAGTGAGGATGAACAACTTCAGTTGAATAGCTTCCGGGGCCTGTTTCTAATATGTGGGATAACATGTTTCTTGGCGCTTCTAATATACTTTTTATCAATGCTACACCAATTCAGTAAAAAATCCCCTAAAAAACCTGGTCCTTCAAATCGTCATAGCTCGCGTTCTGCTCGCATTCAAACTTTTCTAGATTTTGTGGACGTGAAAGAAGACGTATCTCCCAGGAAATTAAAAAGAAAACTGGAACATCTTTCATCAAATCGTTTGAGGACCATATCAAAGAGCAGGAGTCAGAGAATAATTTCCTAA 2739 0.4231 MNLLFLAFTLILLHGSSTAREEASRHDDDDVVNIGAIFTLKTINGQVSKIAIQAAEQDVNSDPRILGGRKLSINIHDSKFSGFLGIIGALKFLMADTVAIIGPQTSGMAHVLSHLANEVHVPLLSFTALDPTLTPLQYPYFVQTAPSDQFQMTAIADMISYYGWREVVAIFSDDDPGRNGVTILGDKLAERRCKLSYKAVLPPDTTATPSFINSQLVKIKSMESRIIVLHTFAKTGLLVFDLAQKQEMMAKGYVWIATTWLSTVLDSVPLPSNTSNSILGVLTLRPHTPQSLKKQAFISRWKHLSNGSIGLNPYGLYAYDSVWTIAQALKLFFDQKGRVSFSNKNLTSKGKENLDLGALSVFDGGKQLLDNILRINMTGLTGPIQFGSDRSPPHPSYEIINVIATGFRSIGYWSNYSGLSVITPEKLQLKPANRSISNQHLKPVIWPGNTIEMPRGWVFPNNGRQLRIGVPNRVSYRAIVSQINASSAVQGYCIEIFRAAIKLLPYAVHYKFVLFGDGKNNPSYYDLVNMINLDVFDAAVGDIAIVTDRTKIVDFTQPYIESGLVVVAPVKRLKSHAWAFLRPFTPMMWGVTAFFFLFVGTVVWILEHRTNDDFRGPPKEQIVTVLWFTFSTMFFAHRENTVSPLGRIVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDSLISSSERIGFQVGSFAANYLTEQLNIPRHRLVPLGSPEEYAIALERGTVAAVVDERPYVELFLSDHCKFSIRGQDFTKSGWGFAFPRGSPFAVDMSTAILTLSENGELQRIHEKWLSEKACAHRSSEDEQLQLNSFRGLFLICGITCFLALLIYFLSMLHQFSKKSPKKPGPSNRHSSRSARIQTFLDFVDVKEDVSPRKLKRKLEHLSSNRLRTISKSRSQRIIS 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03166 912 CDD GluR_Plant 464 802 - -
Viun8g03166 912 CDD PBP1_GABAb_receptor_plant 33 421 IPR044440 -
Viun8g03166 912 Pfam Receptor family ligand binding region 50 402 IPR001828 -
Viun8g03166 912 FunFam Glutamate receptor 577 707 - -
Viun8g03166 912 Gene3D - 461 577 - -
Viun8g03166 912 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 861 IPR015683 -
Viun8g03166 912 Gene3D - 766 801 - -
Viun8g03166 912 PIRSF IGluLR_plant 1 909 IPR017103 -
Viun8g03166 912 FunFam Glutamate receptor 461 577 - -
Viun8g03166 912 SUPERFAMILY Periplasmic binding protein-like II 444 804 - -
Viun8g03166 912 SUPERFAMILY Periplasmic binding protein-like I 29 458 IPR028082 -
Viun8g03166 912 Gene3D - 578 711 - -
Viun8g03166 912 Gene3D - 147 419 - -
Viun8g03166 912 FunFam Glutamate receptor 147 305 - -
Viun8g03166 912 SMART GluR_14 467 804 IPR001320 GO:0015276|GO:0016020
Viun8g03166 912 Pfam Ligand-gated ion channel 804 832 IPR001320 GO:0015276|GO:0016020
Viun8g03166 912 Gene3D - 50 394 - -
Viun8g03166 912 Pfam Bacterial extracellular solute-binding proteins, family 3 484 803 IPR001638 -
Viun8g03166 912 Gene3D - 736 765 - -
Viun8g03166 912 FunFam Glutamate receptor 703 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03166 Viun-Chr8 38185867 38189332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03166 1 911 Ion Channels AT2G17260 61.033 0.0 1122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03166 K05387 - gmx:100793969 1281.16