Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03164 ATGGTCCATTACTTTTGCTTTTGCTGCACACATACATGTCCATTCCATCCCATAGGTTCAGCCAAAGCTAATTTCAATTATTGGACCCAAAAGAGCGAAGACCAGGAGGCAGCACCAAGGTCTGGTCTTCACCGATCGAAGGAGCCACAAAATTGTTCTTTCGGCACCGTTTCAATGGGAAACTGCTGGGGTTCTCAGCCTCACAGCGAGGTAACCCCAACAACCACCGGTAACCTTAGTACAGCCACGCCGGCGACATCTCAGACCATCAGCGGCAGCTATACTACTACCACAACCACAACTACTACTACTTCTGGAAGTGGGAACAGCTCCGTAAATAGCAAGTTCTCAGTGTCAAGCGATGATCAACCTTATCCAACTGGACAGATCTTACCCACCTCTAATTTGAGGATTTTCTCCTTTGCCGACTTGAAAGCTGCAACTAGGAATTTCAGGGCTGATACGGTTCTTGGAGAGGGAGGTTTTGGAAAAGTCTTCAAGGGTTGGCTTGAAGAGAAGGGCGCGTCAAAGGGTGGAAGCGGAACAGTCATTGCCGTCAAAAAACTCAACTCTGAAAGCTTACAAGGAATTGAAGAGTGGCGGTCCGAAGTAAACTTTCTTGGTCGTCTTTCCCATCCTAATCTTGTTAAACTGTTGGGATACTGTTTGGAGGAGACGGAACTTCTTCTGGTGTATGAGTTCATGCAAAAAGGAAGTTTGGAAAATCATCTATTTGGAAGAGGTTCTGCCGTTCAACCACTTCCTTGGGACATCAGGCTTAAGATAGCAATTGGAGCAGCTCGTGGTCTTGCATTCTTGCATACATCCGAGAAAGTAATTTACAGAGATTTCAAAGCCTCAAATATCTTGCTTGATGGGTCTTATAACGCGAAGATATCTGATTTTGGCTTGGCAAAGTTGGGTCCTTCAGCTAGTCAATCTCACGTGACAACAAGGGTGATGGGCACATACGGTTATGCAGCTCCTGAATATGTAGCCACAGGGCATCTATATGTGAAAAGTGATGTATACGGGTTTGGAGTTGTTTTGGTGGAAATACTAACAGGGCTACGAGCACTTGATTCGAACCGTCCAAGTGGGCAACATAATCTAACAGAGTGGGTGAAACCATACCTGCATGACAGAAGAAAGTTGAAGGGCATTATGGATTCTCGATTGGAAGGAAAGTTTCCATCGAAAGCTGCATTCCGTATAGCTCAGCTTTCTTTGAAATGTCTTGCATCTGAACCCAAACAACGGCCATCAATGAAGGAGGTTTTGGAGAGTTTGGAGCGAATTCAAGCTGCCAATGAAAAGCCTGTGGAGCCTAAATTACGATCTAATCATACTCGTCAAGCCCACCAGGCTGTGCACCATCGTTCTCCACTTAAAGACGGTAGTTACTAG 1407 0.4556 MVHYFCFCCTHTCPFHPIGSAKANFNYWTQKSEDQEAAPRSGLHRSKEPQNCSFGTVSMGNCWGSQPHSEVTPTTTGNLSTATPATSQTISGSYTTTTTTTTTTSGSGNSSVNSKFSVSSDDQPYPTGQILPTSNLRIFSFADLKAATRNFRADTVLGEGGFGKVFKGWLEEKGASKGGSGTVIAVKKLNSESLQGIEEWRSEVNFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRALDSNRPSGQHNLTEWVKPYLHDRRKLKGIMDSRLEGKFPSKAAFRIAQLSLKCLASEPKQRPSMKEVLESLERIQAANEKPVEPKLRSNHTRQAHQAVHHRSPLKDGSY 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03164 468 MobiDBLite consensus disorder prediction 437 468 - -
Viun8g03164 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Viun8g03164 468 MobiDBLite consensus disorder prediction 66 123 - -
Viun8g03164 468 CDD STKc_IRAK 157 433 - -
Viun8g03164 468 FunFam Serine/threonine-protein kinase BIK1 118 234 - -
Viun8g03164 468 ProSitePatterns Protein kinases ATP-binding region signature. 157 188 IPR017441 GO:0005524
Viun8g03164 468 PANTHER OS01G0588500 PROTEIN-RELATED 99 434 - -
Viun8g03164 468 Pfam Protein tyrosine and serine/threonine kinase 154 430 IPR001245 GO:0004672|GO:0006468
Viun8g03164 468 SUPERFAMILY Protein kinase-like (PK-like) 130 432 IPR011009 -
Viun8g03164 468 ProSiteProfiles Protein kinase domain profile. 151 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g03164 468 Gene3D Phosphorylase Kinase; domain 1 135 234 - -
Viun8g03164 468 Gene3D Transferase(Phosphotransferase) domain 1 235 458 - -
Viun8g03164 468 FunFam Serine/threonine-protein kinase PBS1 235 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03164 Viun-Chr8 38166593 38169575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03164 137 438 Receptor kinase-like Gene Family AT4G02010 50.327 4.15e-100 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun8g03164 PK_Tyr_Ser-Thr 4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03164 - - vun:114194495 884.019