Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03160 ATGAAGGAGGATTGTGAATGCGGTGAAGAAGCGGAGAAGAATCGGAGTAAAGCAATAGTGCCGATGGAAGAGGAGGGGTGGAAGGGGAAGAGAGCCTCCTCCGAGCCACGTCCATGCACGGAGTGCGGCAAGAGGTTCTGGTCGTGGAAGGCACTCTTCGGTCACATGCGATGCCACCCTGAGCGTCAGTGGAGAGGGATCAACCCTCCTCCAAACGCAAGAAGACATCATCATCAGCAGCAGCGGCAGCAGCAGCAACGACAACCGCAGCAACAGATGACGATGATAATGACCCAGGAAGACCACGAGGTGGCTGCGTGTTTGCTTCTGCTGGCGAATTCAAACAACAACAGAGAGAAAGGGAAAGAGAAAGGGAAAGAGAAAGAGAAGGAGGAAGAGGTTCAGCAGTGGCAGTTCGAGTGCTCCAGTTGCAACAGGGTGTTCGGATCGCACCAGGCTCTGGGGGGGCACCGCGCGAGTCACAAGAACGTGAAGGGGTGTTTTGCGAACACCGGTAATGTAAGCATAGGGTTAGGCATTGGAAGTAGCGGGAAGTGTGAGGAGGAGAACGTTAACATGAGTGGTGATGGGCACAAGTGCAGCATATGCTTGAGGGTGTTCTCCACAGGGCAAGCACTTGGTGGGCACAAGAGGTGTCATTGGGAGAATCAGAAAGCCGAAAACCTTCTCCTCCTTGACTTACCTAAGTCCTCCCTCGACTTGAATTCTCCTCCTCTCACTCTCGATTTGAGGTTGGGACTCTAG 765 0.5359 MKEDCECGEEAEKNRSKAIVPMEEEGWKGKRASSEPRPCTECGKRFWSWKALFGHMRCHPERQWRGINPPPNARRHHHQQQRQQQQRQPQQQMTMIMTQEDHEVAACLLLLANSNNNREKGKEKGKEKEKEEEVQQWQFECSSCNRVFGSHQALGGHRASHKNVKGCFANTGNVSIGLGIGSSGKCEEENVNMSGDGHKCSICLRVFSTGQALGGHKRCHWENQKAENLLLLDLPKSSLDLNSPPLTLDLRLGL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03160 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 225 IPR013087 -
Viun8g03160 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Viun8g03160 254 Pfam C2H2-type zinc finger 38 61 - -
Viun8g03160 254 Pfam C2H2-type zinc finger 198 222 - -
Viun8g03160 254 Pfam C2H2-type zinc finger 139 162 - -
Viun8g03160 254 SUPERFAMILY beta-beta-alpha zinc fingers 36 161 IPR036236 -
Viun8g03160 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Viun8g03160 254 MobiDBLite consensus disorder prediction 62 93 - -
Viun8g03160 254 SUPERFAMILY beta-beta-alpha zinc fingers 196 224 IPR036236 -
Viun8g03160 254 SMART c2h2final6 198 220 IPR013087 -
Viun8g03160 254 SMART c2h2final6 37 59 IPR013087 -
Viun8g03160 254 SMART c2h2final6 139 161 IPR013087 -
Viun8g03160 254 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 29 247 - -
Viun8g03160 254 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Viun8g03160 254 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Viun8g03160 254 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Viun8g03160 254 Gene3D Classic Zinc Finger 136 220 - -
Viun8g03160 254 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03160 Viun-Chr8 38107101 38107865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03160 37 254 C2H2 Transcription Factor Family AT4G35280 51.111 6.23e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun8g03160 zf-C2H2_6 9.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03160 - - vun:114195192 464.536