Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03144 ATGGGTTGCTGCCAATCGTCGATGCTGCTGAGAGTGGGGGAGAGAGAGACTCACCCGGAGAGGGAAAAGGAAAGGGAAAAGGAAAAGGAGAAGGAAAGGGAAAGGGAAAAGGAGAAGGAGAAAGACCAGGCCTACGGAACCCACCGGAGGAGTTCTGCCGGAGAGGGGGAGGGAGATGGGGACAAAGACGGTGTCGATTTCTCCTTCGCCGAGTTCTCGCTGCCGGAGCTCAAGGCGGCCACCAACAATTTCAGCTCGGAGTATATCGTCTCGGAGAGTGGCGAGAAGGCGCCTAACCTCGTCTACAAGGGTCGCCTCCAGAACCAGAGCCGTTGGATTGCGGTCAAGAAGTTCAGCAAGGCTGCGTGGCCGGATCCCAAGCAGTTCGTCGAAGAGGCTTCCGGCGTCGGCAAGTTGCGCCACCCACGGCTCGCTAATTTAATCGGTTACTGCTGCGACGGCGATGAGAGGCTCCTCGTTGCGGAGTACATGCCCAATGACACTCTCGCCAAGCATCTCTTCCACTGGGAAACTCAGACTATTGAGTGGGCCATGCGCTTGCGGGTGGCTCTGTACATCGCACAGGCTTTGCATTATTGCAGTTCAGAGGGGCGTCCCCTGTACCACGACTTGAATGCTTACCGTGTTCTCTTCGACCAAGAAGGTGATCCTCGTCTCTCTTGTTTCGGTTTTATGAAGAACAGCAGGGATGGCAAGAGTTATAGCACCAATCTTGCTTATACACCTCCTGAGTATTTAAGAAACGGAAGGGTCACCCCTGAAAGTGTCATTTACAGCTTTGGAACTGTCCTTCTAGACCTCCTCAGTGGCAAACACATTCCTCCCAGTCATGCACTTGATATGATACAGGGGAAGAACATTATGCTCTTAATGGATTCACATTTGGAGGGAAAGTTTTCAACTGAAGAAGCGACAGTGGTTGTTAATCTTGCCTCCAAATGCTTGCAATATGAACCGAGGGAGCGGCCTGATACAAAAGATTTGGTCACAACACTTGCCCCATTGCACACAAAACCCGATGTTCGTTCTCACATCATGCTTGGAATTCCAAAGCACGAGGAAGCTCCATCAACCCCACAACGTCCTCTTTCAGCAATGGGAGAGGCTTGTTCAAGAATGGACCTTACTGCAATACATCAGATCTTGGTCGCGACACACTACAGAGATGATGAAGGAACTAATGAGCTGTCGTTCCAAGAGTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAAGACTTCAAGACAGCTATTGATAACTATTCCCAGTTCATTGATGTGGGAACGATGGTCTCCCCAACTGTTTTTGCAAGACGCAGTCTATGCTATCTGTTATGTGATCAACCAGATCCAGCACTACGTGACGCAATGCAAGCACAGTGCGTTTATCCAGACTGGCCAACGGCTTTCTACATGCAATCAGTTGCTCTTGCGAAGCTGGACATGCACAAGGATGCGGCTGATATGTTAAATGAAGCAGCTGCATTGGAAGAGAAGAGACAAAGAGGAGCGAGAGGATCGTAA 1575 0.5048 MGCCQSSMLLRVGERETHPEREKEREKEKEKEREREKEKEKDQAYGTHRRSSAGEGEGDGDKDGVDFSFAEFSLPELKAATNNFSSEYIVSESGEKAPNLVYKGRLQNQSRWIAVKKFSKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWETQTIEWAMRLRVALYIAQALHYCSSEGRPLYHDLNAYRVLFDQEGDPRLSCFGFMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNIMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPDTKDLVTTLAPLHTKPDVRSHIMLGIPKHEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAALEEKRQRGARGS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03144 524 MobiDBLite consensus disorder prediction 13 64 - -
Viun8g03144 524 SUPERFAMILY TPR-like 416 517 IPR011990 GO:0005515
Viun8g03144 524 MobiDBLite consensus disorder prediction 1 64 - -
Viun8g03144 524 FunFam probable serine/threonine-protein kinase At4g35230 413 522 - -
Viun8g03144 524 ProSiteProfiles Protein kinase domain profile. 87 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g03144 524 FunFam probable serine/threonine-protein kinase At4g35230 60 163 - -
Viun8g03144 524 Gene3D Tetratricopeptide repeat domain 413 522 IPR011990 GO:0005515
Viun8g03144 524 SUPERFAMILY Protein kinase-like (PK-like) 68 343 IPR011009 -
Viun8g03144 524 FunFam probable serine/threonine-protein kinase At5g41260 165 356 - -
Viun8g03144 524 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 24 519 IPR045845 GO:0004672|GO:0009742
Viun8g03144 524 Gene3D Transferase(Phosphotransferase) domain 1 165 356 - -
Viun8g03144 524 Coils Coil 20 43 - -
Viun8g03144 524 Gene3D Phosphorylase Kinase; domain 1 61 163 - -
Viun8g03144 524 Pfam Protein kinase domain 100 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03144 Viun-Chr8 38053815 38060541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03144 72 363 Glycoside Hydrolase AT3G07070 34.713 9.73e-48 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Viun8g03144 Pkinase 4.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03144 K14500 - gmx:100808907 972.23