Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03140 ATGAGAACTTTACTTCCTCAGAAGAGCGTCAAGGCAAATACTTGTTCCCAGGATATTGAAAAGACAGGTCTAATAGTTCCTAAAAGTCCTTTATCAGATGCTCCTTATGATAAATCTTCCATTCATTTGTCTCTTAAAAATAAGGTCATCTCCCCTGCAACAAAAGGTGCACACTCATTGCCAGTTACTCCATTTGGAACTTCAGCTTCAGAGAACGCAGATGGAAGACATCTTGTATGTGATTCTGGTTCAAGTAAAATGGGTGATCAACCTCATATTACCCGATCATTTTCAGTCCCAGTTAAAAGCAGAGCCTCTAATTTAAGGGTTACAGATTCCAGGGGCTTGATTCGTGTAATTTCAGCAAGGCAAACTGTTCGTAGAAAATCAAGTGATGGTGGTTTGGTTCCAGAGATTGCCATTGAAGATGCCACCGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATATGTTTGGTGGAGCTCGGGGAAGGAGGGAATACACTTAAGTTGGAATGCAGTTGTAGAGGTGATCTTGCACTTGCTCACCAGGAATGTGCACTGAAGTGGTTTAGTATAAAGGGAAACAGGACCTGTGATGTCTGCAAGCGGGAAGTCCAAAACCTCCCGGTAACACTGTTGAAAATTTGCGATCGTCAAACTTCTTCTAGGCATACATCAAATGTGCCACCACGAGAAGTAACGTATTACAGGATCTGGCAGGATGTACCAGTACTTGTCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTAGAGCAACTACTGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCATTACCTTTTGCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCGTCAACTATGGTGAACAGGAGTTTCATTTGGGCTTATGCCTGCTTCCAGTTTGCACTTCTTATCCTCTTAGCTCATTTATTTTATACTATTCTCAATTTAAATGGAGTTCTCTCGATTCTCCTTTCCTCATTCACTGGGTTTGGCATTGCAATCAGTGCGAACTCTCTGGTTATGGAATGTATTGGATGGAGAAATATTTGGAGGATTCAATCCTCTATCCAGAATGTTAACATGACAGAGCAGCAGCGTCGAGAGCATGTACATCATCAGAGACAGCAAAATCAAATAGAACATCAACCACAAAGACGATCATCAACGACGGTAGAACCGCCGCAACATCATGGAAATAGTTGA 1221 0.4201 MRTLLPQKSVKANTCSQDIEKTGLIVPKSPLSDAPYDKSSIHLSLKNKVISPATKGAHSLPVTPFGTSASENADGRHLVCDSGSSKMGDQPHITRSFSVPVKSRASNLRVTDSRGLIRVISARQTVRRKSSDGGLVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKLECSCRGDLALAHQECALKWFSIKGNRTCDVCKREVQNLPVTLLKICDRQTSSRHTSNVPPREVTYYRIWQDVPVLVLVSMLAYFCFLEQLLVSDLGPRALAISLPFACVLGLLSSMIASTMVNRSFIWAYACFQFALLILLAHLFYTILNLNGVLSILLSSFTGFGIAISANSLVMECIGWRNIWRIQSSIQNVNMTEQQRREHVHHQRQQNQIEHQPQRRSSTTVEPPQHHGNS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03140 406 PANTHER OS02G0165000 PROTEIN 2 370 - -
Viun8g03140 406 ProSiteProfiles Zinc finger RING-CH-type profile. 147 209 IPR011016 GO:0008270
Viun8g03140 406 MobiDBLite consensus disorder prediction 369 406 - -
Viun8g03140 406 CDD RING_CH-C4HC3_MARCH 155 203 - -
Viun8g03140 406 MobiDBLite consensus disorder prediction 386 406 - -
Viun8g03140 406 SUPERFAMILY RING/U-box 151 206 - -
Viun8g03140 406 Pfam RING-variant domain 155 202 IPR011016 GO:0008270
Viun8g03140 406 SMART ringv_2 154 203 IPR011016 GO:0008270
Viun8g03140 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 210 IPR013083 -
Viun8g03140 406 MobiDBLite consensus disorder prediction 370 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03140 Viun-Chr8 38037591 38044095 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03140 138 209 C3H Transcription Factor Family AT2G37950 45.205 2.63e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03140 - - gmx:100789461 581.637