Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03139 ATGGAAAAGAAAGGTGACGGTGCTGATGCTGAGCCTCAATTTGACGCTGATTTTGTGCCAGATCCTTCCCAGAGTTGTACTGGAAATGAAAAGGGTGACAGGGCCTCCAAGATATCTCAGTCCAGAAGACCCAATCTATCCTCACTGCAAATACCAGCGTGGTCACTAGATATAGCATTATCTACTTTTGCAAAAACCGATGGTCCTTCAGTTTCACGATCAAGTCCTGGTTCTACTAGAGGACTTCCTCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAACTTTACTTCCTCAGAAGAGCGTCAAGGCAAATACTTGTTCCCAGGATATTGAAAAGACAGGTCTAATAGTTCCTAAAAGTCCTTTATCAGATGCTCCTTATGATAAATCTTCCATTCATTTGTCTCTTAAAAATAAGGTCATCTCCCCTGCAACAAAAGGTGCACACTCATTGCCAGTTACTCCATTTGGAACTTCAGCTTCAGAGAACGCAGATGGAAGACATCTTGTATGTGATTCTGGTTCAAGTAAAATGGGTGATCAACCTCATATTACCCGATCATTTTCAGTCCCAGTTAAAAGCAGAGCCTCTAATTTAAGGGTTACAGATTCCAGGGGCTTGATTCGTGTAATTTCAGCAAGGCAAACTGTTCGTAGAAAATCAAGTGATGGTGGTTTGGTTCCAGAGATTGCCATTGAAGATGCCACCGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATATGTTTGGTGGAGCTCGGGGAAGGAGGGAATACACTTAAGTTGGAATGCAGTTGTAGAGGTGATCTTGCACTTGCTCACCAGGAATGTGCACTGAAGTGGTTTAGTATAAAGGGAAACAGGACCTGTGATGTCTGCAAGCGGGAAGTCCAAAACCTCCCGGTAACACTGTTGAAAATTTGCGATCGTCAAACTTCTTCTAGGCATACATCAAATGTGCCACCACGAGAAGTAACGTATTACAGGATCTGGCAGGATGTACCAGTACTTGTCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTAGAGCAACTACTGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCATTACCTTTTGCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCGTCAACTATGGTGAACAGGAGTTTCATTTGGGCTTATGCCTGCTTCCAGTTTGCACTTCTTATCCTCTTAGCTCATTTATTTTATACTATTCTCAATTTAAATGGAGTTCTCTCGATTCTCCTTTCCTCATTCACTGGGTTTGGCATTGCAATCAGTGCGAACTCTCTGGTTATGGAATGTATTGGATGGAGAAATATTTGGAGGATTCAATCCTCTATCCAGAATGTTAACATGACAGAGCAGCAGCGTCGAGAGCATGTACATCATCAGAGACAGCAAAATCAAATAGAACATCAACCACAAAGACGATCATCAACGACGGTAGAACCGCCGCAACATCATGGAAATAGTTGA 1503 0.4271 MEKKGDGADAEPQFDADFVPDPSQSCTGNEKGDRASKISQSRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSTRGLPPRPNSAKVRSSMRTLLPQKSVKANTCSQDIEKTGLIVPKSPLSDAPYDKSSIHLSLKNKVISPATKGAHSLPVTPFGTSASENADGRHLVCDSGSSKMGDQPHITRSFSVPVKSRASNLRVTDSRGLIRVISARQTVRRKSSDGGLVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKLECSCRGDLALAHQECALKWFSIKGNRTCDVCKREVQNLPVTLLKICDRQTSSRHTSNVPPREVTYYRIWQDVPVLVLVSMLAYFCFLEQLLVSDLGPRALAISLPFACVLGLLSSMIASTMVNRSFIWAYACFQFALLILLAHLFYTILNLNGVLSILLSSFTGFGIAISANSLVMECIGWRNIWRIQSSIQNVNMTEQQRREHVHHQRQQNQIEHQPQRRSSTTVEPPQHHGNS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03139 500 SMART ringv_2 248 297 IPR011016 GO:0008270
Viun8g03139 500 PANTHER OS02G0165000 PROTEIN 27 464 - -
Viun8g03139 500 MobiDBLite consensus disorder prediction 1 46 - -
Viun8g03139 500 MobiDBLite consensus disorder prediction 463 500 - -
Viun8g03139 500 CDD RING_CH-C4HC3_MARCH 249 297 - -
Viun8g03139 500 MobiDBLite consensus disorder prediction 480 500 - -
Viun8g03139 500 SUPERFAMILY RING/U-box 245 300 - -
Viun8g03139 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 304 IPR013083 -
Viun8g03139 500 Pfam RING-variant domain 249 296 IPR011016 GO:0008270
Viun8g03139 500 ProSiteProfiles Zinc finger RING-CH-type profile. 241 303 IPR011016 GO:0008270
Viun8g03139 500 MobiDBLite consensus disorder prediction 65 94 - -
Viun8g03139 500 MobiDBLite consensus disorder prediction 464 479 - -
Viun8g03139 500 MobiDBLite consensus disorder prediction 20 46 - -
Viun8g03139 500 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03139 Viun-Chr8 38037241 38044093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03139 232 303 C3H Transcription Factor Family AT2G37950 45.205 4.24e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03139 - - gmx:100789461 729.169