Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03138 ATGGAAAAGAAAGGTGACGGTGCTGATGCTGAGCCTCAATTTGACGCTGATTTTGTGCCAGATCCTTCCCAGAGTTGTACTGGAAATGAAAAGGGTGACAGGGCCTCCAAGATATCTCAGTCCAGAAGACCCAATCTATCCTCACTGCAAATACCAGCGTGGTCACTAGATATAGCATTATCTACTTTTGCAAAAACCGATGGTCCTTCAGTTTCACGATCAAGTCCTGGTTCTACTAGAGGACTTCCTCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAACTTTACTTCCTCAGAAGAGCGTCAAGGCAAATACTTGTTCCCAGGATATTGAAAAGACAGGTCTAATAGTTCCTAAAAGTCCTTTATCAGATGCTCCTTATGATAAATCTTCCATTCATTTGTCTCTTAAAAATAAGGTCATCTCCCCTGCAACAAAAGGTGCACACTCATTGCCAGTTACTCCATTTGGAACTTCAGCTTCAGAGAACGCAGATGGAAGACATCTTAAAATGGGTGATCAACCTCATATTACCCGATCATTTTCAGTCCCAGTTAAAAGCAGAGCCTCTAATTTAAGGGTTACAGATTCCAGGGGCTTGATTCGTGTAATTTCAGCAAGGCAAACTGTTCGTAGAAAATCAAGTGATGGTGGTTTGGTTCCAGAGATTGCCATTGAAGATGCCACCGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATATGTTTGGTGGAGCTCGGGGAAGGAGGGAATACACTTAAGTTGGAATGCAGTTGTAGAGGTGATCTTGCACTTGCTCACCAGGAATGTGCACTGAAGTGGTTTAGTATAAAGGGAAACAGGACCTGTGATGTCTGCAAGCGGGAAGTCCAAAACCTCCCGGTAACACTGTTGAAAATTTGCGATCGTCAAACTTCTTCTAGGCATACATCAAATGTGCCACCACGAGAAGTAACGTATTACAGGATCTGGCAGGATGTACCAGTACTTGTCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTAGAGCAACTACTGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCATTACCTTTTGCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCGTCAACTATGGTGAACAGGAGTTTCATTTGGGCTTATGCCTGCTTCCAGTTTGCACTTCTTATCCTCTTAGCTCATTTATTTTATACTATTCTCAATTTAAATGGAGTTCTCTCGATTCTCCTTTCCTCATTCACTGGGTTTGGCATTGCAATCAGTGCGAACTCTCTGGTTATGGAATGTATTGGATGGAGAAATATTTGGAGGATTCAATCCTCTATCCAGAATGTTAACATGACAGAGCAGCAGCGTCGAGAGCATGTACATCATCAGAGACAGCAAAATCAAATAGAACATCAACCACAAAGACGATCATCAACGACGGTAGAACCGCCGCAACATCATGGAAATAGTTGA 1482 0.4278 MEKKGDGADAEPQFDADFVPDPSQSCTGNEKGDRASKISQSRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSTRGLPPRPNSAKVRSSMRTLLPQKSVKANTCSQDIEKTGLIVPKSPLSDAPYDKSSIHLSLKNKVISPATKGAHSLPVTPFGTSASENADGRHLKMGDQPHITRSFSVPVKSRASNLRVTDSRGLIRVISARQTVRRKSSDGGLVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKLECSCRGDLALAHQECALKWFSIKGNRTCDVCKREVQNLPVTLLKICDRQTSSRHTSNVPPREVTYYRIWQDVPVLVLVSMLAYFCFLEQLLVSDLGPRALAISLPFACVLGLLSSMIASTMVNRSFIWAYACFQFALLILLAHLFYTILNLNGVLSILLSSFTGFGIAISANSLVMECIGWRNIWRIQSSIQNVNMTEQQRREHVHHQRQQNQIEHQPQRRSSTTVEPPQHHGNS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03138 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 297 IPR013083 -
Viun8g03138 493 MobiDBLite consensus disorder prediction 457 472 - -
Viun8g03138 493 MobiDBLite consensus disorder prediction 473 493 - -
Viun8g03138 493 CDD RING_CH-C4HC3_MARCH 242 290 - -
Viun8g03138 493 MobiDBLite consensus disorder prediction 1 46 - -
Viun8g03138 493 ProSiteProfiles Zinc finger RING-CH-type profile. 234 296 IPR011016 GO:0008270
Viun8g03138 493 Pfam RING-variant domain 242 289 IPR011016 GO:0008270
Viun8g03138 493 SMART ringv_2 241 290 IPR011016 GO:0008270
Viun8g03138 493 PANTHER OS02G0165000 PROTEIN 27 457 - -
Viun8g03138 493 MobiDBLite consensus disorder prediction 456 493 - -
Viun8g03138 493 SUPERFAMILY RING/U-box 238 293 - -
Viun8g03138 493 MobiDBLite consensus disorder prediction 65 94 - -
Viun8g03138 493 MobiDBLite consensus disorder prediction 20 46 - -
Viun8g03138 493 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03138 Viun-Chr8 38037241 38044094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03138 225 296 C3H Transcription Factor Family AT2G37950 45.205 4.24e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03138 - - gmx:100789461 712.99