Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03128 ATGGAGATGCAACAACTCCTCAGTATGGGCTTTCCCGATGAGTTAGCCGCTCAAGCCCTGGCCGCCACCGGCGGCAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCACAAATCCAACGCCGCCAACACCTCCACATTCCAGCCCAAGCTTGATCGCTTCTTCCATTCTTCTCAATCCCCCACACCTCCACAATCGCAATCACAGGAACAAATAGAAGAAGAAGAAGAAGACGAAGAACCTTCCAAACGTCCCAGACCTTCTACACATTCTGCGCAGCATCCACAGCCACAACCACCGCCACCACCGCCACCGCAACAAAACTGGCCCACTTTCTTCTTGAAAACCGCAGAGAAGAAAAACGCCAACACTCACATTCACCAACCCTTGTACGAGCGCTTGCGTCCCAGGACCCTCGACGACGTCGTAGGGCAGGACCATCTCCTCGCCGCCAACTCCCTCCTTCGCTCCGCAATCCAACGCAACCGCCTCCCCTCCATCCTCCTGTGGGGTCCACCTGGTACTGGTAAGACCACTATCGCTAAAGCCATCGTTAAATCTTCAACCGCAACACGTTACCGGTTTGTCTCCTTATCCGCCGTCACTAGTGGCGTTAAGGACGTCAGGGACGCCGTTGACGAGGCTCGAAAACTCAGACTTAAATCCAACCAATCCACCGTTCTCTTCGTGGACGAGGTTCACCGGTTCAACAAGTCCCAGCAGGACTCTTTCTTACCCGTCATTGAAGATGGCAGCATTGTATTCGTTGGGGCCACCACTGAGAACCCTTCTTTCCATTTGATTACACCTCTCTTGTCTCGCTGCCGTGTCCTCACCCTTAACCCTCTCCAACCCCACCACCTTGCCTTGCTTCTGAACCGCGCTGTCAGTGACGCCGACAAAGGGTTGGTGCAGAGCGCGGGGGTTCAAGTTGATGTTAAAGAGGATGCTGTTGATTATATAAGCAACAATTGCGATGGAGATGCTCGGGTGGCCCTCAATGCTCTGGAGATTGCAGCTGTTACTGCAGCAGCGAGGGTACAACATGGTAAACAAAAAGAAGAAGGGGTGGAAGATCTTCATACAAACGAGGATTATAAGGTTGCTGTTGTTAGTGTTGATGATGCAAGGGAAGCACTTCAGTGCAAGCATCTTGCTTACGATAAAGCAGGGGAAGAGCACTATAATCTGATCAGCGCGCTGCACAAGTCTATGAGGGGAAGCGATGCGAATGCAGGTATTTATTGGTTGGCAAGAATGTTAGAGGGAGGTGAAGAGCCTCTTTACATTGCACGCAGACTCATACGATTCGCAAGTGAGGATGTTGGTTTGGCTGATCCATTAGCTCTTAATCAGGCTGTTTCTTGCTACCAAGCTTGCCACTTCTTGGGAATGCCCGAATGCAATGTAATTCTTGCACAGTGCGTTGCTTACTTGGCCTTGGCACCTAAATCTGTTGCAGTGTATCGAGCCTTAGGGGCCGCGCAGAAGGCAGTGAGGGAATCTGCGGGACAGAATGAGGGGGTGCCTCTGCATTTGAGGAATGCTCCAACCAAATTAATGAAGGAAATTGGGTATGCGAAGGGATACATCTACCCTCCGGACAACCCTTCCTCCACACAGACTTACTTGCCACCATCACTTCAAGGCTACAAGTTTCTTGATTGGCCTGACAGGATTCCTTATGATGGATCAGAGCATTAA 1707 0.5114 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKSNAANTSTFQPKLDRFFHSSQSPTPPQSQSQEQIEEEEEDEEPSKRPRPSTHSAQHPQPQPPPPPPPQQNWPTFFLKTAEKKNANTHIHQPLYERLRPRTLDDVVGQDHLLAANSLLRSAIQRNRLPSILLWGPPGTGKTTIAKAIVKSSTATRYRFVSLSAVTSGVKDVRDAVDEARKLRLKSNQSTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVSDADKGLVQSAGVQVDVKEDAVDYISNNCDGDARVALNALEIAAVTAAARVQHGKQKEEGVEDLHTNEDYKVAVVSVDDAREALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAGIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVAVYRALGAAQKAVRESAGQNEGVPLHLRNAPTKLMKEIGYAKGYIYPPDNPSSTQTYLPPSLQGYKFLDWPDRIPYDGSEH 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03128 568 Gene3D - 284 359 - -
Viun8g03128 568 Pfam UBA/TS-N domain 4 35 IPR015940 -
Viun8g03128 568 MobiDBLite consensus disorder prediction 55 70 - -
Viun8g03128 568 SUPERFAMILY UBA-like 3 40 IPR009060 GO:0005515
Viun8g03128 568 SMART AAA_5 164 284 IPR003593 GO:0016887
Viun8g03128 568 Pfam ATPase family associated with various cellular activities (AAA) 168 278 IPR003959 GO:0005524|GO:0016887
Viun8g03128 568 Gene3D - 382 485 - -
Viun8g03128 568 MobiDBLite consensus disorder prediction 55 111 - -
Viun8g03128 568 CDD HLD_clamp_RarA 284 382 - -
Viun8g03128 568 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 560 - -
Viun8g03128 568 CDD AAA 144 277 - -
Viun8g03128 568 SUPERFAMILY post-AAA+ oligomerization domain-like 392 558 IPR008921 GO:0003677|GO:0006260
Viun8g03128 568 Gene3D - 117 282 IPR027417 -
Viun8g03128 568 FunFam Putative AAA family ATPase 382 485 - -
Viun8g03128 568 Gene3D - 486 561 - -
Viun8g03128 568 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Viun8g03128 568 MobiDBLite consensus disorder prediction 93 110 - -
Viun8g03128 568 FunFam AAA-type ATPase family protein 284 358 - -
Viun8g03128 568 FunFam Replication-associated recombination protein A 120 283 - -
Viun8g03128 568 Gene3D - 2 50 - -
Viun8g03128 568 Pfam AAA C-terminal domain 311 407 IPR032423 -
Viun8g03128 568 Pfam MgsA AAA+ ATPase C terminal 408 554 IPR021886 -
Viun8g03128 568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 362 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03128 Viun-Chr8 37999759 38001791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03128 130 362 Core DNA Replication Machinery Family AT1G77470 27.615 3.49e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03128 K07478 - gmx:100799257 883.248