Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03124 ATGCCTGCACAAGCTCTGCTATCATCTTCATCTCTCGTCCTCTCAGCAGAGGCTGCAAGACAGAGTCTCGGACCAAGATCACACCAATCTCCGGTTACCTTCTCCCGAAAAGCCTCCTTCATTGTTAAGGCAGCTTCTACTCCCCCTGTCAAGCAAGGAGCGGACAGACCTTTATGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGCAGCCTTCCCGGTGACTATGGATTTGACCCTCTTGGGCTTTCAGACCCTGAAGGAACAGGGGGGTTCATCGAGCCGAAATGGCTAGCGTATGGTGAGATCATCAATGGTCGTTTTGCAATGTTGGGCGCAGTTGGTGCCATAGCACCTGAAATTCTGGGCAAGGCTGGTCTGATCCCTGAGGAGACAGCACTGCCATGGTTCAGAACCGGTGTGTTCCCACCCGCAGGAACATACAACTACTGGGCAGACTCGTACACGCTGTTCGTGTTGGAGATGGCACTGATGGGTTTTGCAGAACACAGAAGATTCCAAGACTGGGCGAAACCAGGGTCTATGGGGAAGCAGTACTTCTTAGGACTAGAAAAAGGTCTCGGAGGTTCTGGTGAACCAGCATACCCCGGAGGACCTTTGTTCAACCCTCTTGGTTTCGGCAAGGATGAGAAATCGTTGAAGGATTTGAAGCTGAAGGAGGTGAAGAATGGAAGGTTGGCTATGTTGGCGATCTTGGGTTACTTTATTCAAGCTCCTGTCACAGGTGTTGGTCCATACCAGAACCTCCTAGATCATCTTGCTGACCCTGTGCACAACAACATCTTGACCAGTCTCAAGTTCCACTGA 831 0.5054 MPAQALLSSSSLVLSAEAARQSLGPRSHQSPVTFSRKASFIVKAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAVGAIAPEILGKAGLIPEETALPWFRTGVFPPAGTYNYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFIQAPVTGVGPYQNLLDHLADPVHNNILTSLKFH 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03124 276 SUPERFAMILY Chlorophyll a-b binding protein 55 272 - -
Viun8g03124 276 Gene3D Chlorophyll a/b binding protein domain 58 275 - -
Viun8g03124 276 Pfam Chlorophyll A-B binding protein 67 246 IPR022796 -
Viun8g03124 276 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 21 271 IPR001344 GO:0009765|GO:0016020
Viun8g03124 276 FunFam Chlorophyll a-b binding protein, chloroplastic 57 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03124 Viun-Chr8 37986505 37987878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03124 19 276 Chloroplast and Mitochondria Gene Families AT1G61520 86.047 4.33e-163 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03124 K08909 - gmx:100784090 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g03124 8 37986505 37987878 Viun8g03124 8 37986505 37987878 ECH