Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03120 ATGGCAACCGTTACTCCTCAAAAGGGTAGTATTAGTAGTAGTGAAAGTGACGCAGACCCTCTTAACTGGGGTGAGGCGGCGGAATCACTTAAGGGTAGCCACTTGGAGGAAGTGAAAAGGATGGCGGCGGAGTACCGGAGGGCAGTGATCCATGTGGGTGGAAAGGAGAAGCTCACTGTGTCAATGGTGGCTGCTGTTGCTAACCATTACTTGCAGGCTAAGGTTGACCTTTCAGAGTCTGCAAGGGAAGGGGTTGAAGCTAGCTGCAAGTGGATCATGGATAACATCGACAAAGGCACTCCCATTTATGGTGTTACCACTGGTTTTGGTGCTTCCTCCAACAGGAAAACTCAAGATGGCCTTGCTCTTCAGAAGGAAATGGTTAGGTTTTTAAATTGCGCTATATTTGGCTACGAAACAGAGTTGTCTCATACACTGCCAAAATCAGCAACCAGAGCAGCAATGCTTGTGAGGGTTAATACCCTTCTTCAAGGGTATTCGGGTATTAGATTTGAAATCTTAGAAGCTATCACCAAACTCCTGAACAAGAATGTCACCCCAATCTTACCCTTACGTGGTACACTTACTGCGTCTGGTGATCTAATTCCTCTGTCATACATTGTTGCATTGCTAACCGGTAGGCGAAACAGTAAAGCTGTTGGACCCTCTGGAGAGTCCCTCAGTGCTAAGGAAGCTTTCCATTTAGCAGGTTTAGAAAGTGGGTTCTTAGAGTTGAAGCCCAAGGAAGGTCTTGCTCTTGTAAATGGCACAGGCGTTGGGTCTGGTGTAGCTTCTGTGGTGCTTTTTGAGGCAAACATTTTAGCTTTGTTGGCAGAAGTTCTATCAGCAGTTTTTGCTGAAGTCATGCAGGGAAAGCCAGAGTTTACACATCACCTTATACATAAGCTGAAGTACCATCCTGGTCAAATTGAAGCTGCTGCTATTATGGAGCACATTCTAGATGGAAGCTCTTATGTCAAGAATGCTAAACTGCAACAGCCAGATCCATTGCAGAAGCCTAAAAAGGAACGTTATGCTCTTGTAACTTCTCCTCAATGGCTTGGTCCACAGATTGAAGTCATCCGATTTTCGACCAAATCAATTGAAAGGGAAATAAACTCGGTAAATGACAATCCCTTGATTGATGTCACAAGTGATAAAGCTCTGAATGGTGGTAATTTCCAAGGCACCCCAATTGGAGTTTCAATGGATAATGCACGTTTAGCTGTTGCTTCAATCGGCAAACTCATCTTTGCGCAATTTACTGAACTAGACAATGATTTGTATAGTAATGGGCTACCATCAAACCTGTCTGCTGGTAGAAATCCAAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGTTCTGAACTTCAATATCTGGCAAATCCAGTAACTAGCCATGTGCAAAGTACTGAGCAGCACAACCAAGATGTGAACTCCTTGGGGTTAATTTCGGCTCTGAAAACTGTCGATGCCATAGAGATATTAAAGCTTATGTCTTCAACTTATCTGGTTGCACTCTGCCAAGCTATTGACTTGAGGCATTTAGAGGAAATTTTCAAGAACACTGTCAAGAGTACTGTAAGCAGAGTTGCACTGAAAACATTAAGTACTGAAGACAAAGAAGAAATTAACCCATTTCGACTCACCGAGGAAGAGTTAGTTAAAGTGGTCGATAGAGAATATGTATTTTCCTACATTGATGATCCCTTAAATGTTCGGTACCCATTGATGCCAAAACTGAAGCAGGTACTTTATGAGCAAGCACACAGCAGTGTCATTAATGACAAGAATGTGAGTTTGTTGACTTTTGAGAAGATTGGAGCTTTTGAAGAAGAATTGAAGTCTCTCTTGCCAAAGGAAATTGAAAGTGCACGGGTGGCTTATGAGAACGGCAATCCAACAATTCCAAACAGAATCAAGGAGTGCAGGTCATATCCACTGTACAAATTTGTGAGGGAAGAGTTAGGGATAAGGTTGCTCACAGGCGAAAAAGCTCTCTCACCAGATGAAGAATTCGAAAAAGTATATACAGCCATGTGTCAAGCAAAGATAATTGACCCAATTCTGGAATGTCTAAGAGATTGGAACGGGGTTCCCATCCCAATATAA 2130 0.4286 MATVTPQKGSISSSESDADPLNWGEAAESLKGSHLEEVKRMAAEYRRAVIHVGGKEKLTVSMVAAVANHYLQAKVDLSESAREGVEASCKWIMDNIDKGTPIYGVTTGFGASSNRKTQDGLALQKEMVRFLNCAIFGYETELSHTLPKSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNKNVTPILPLRGTLTASGDLIPLSYIVALLTGRRNSKAVGPSGESLSAKEAFHLAGLESGFLELKPKEGLALVNGTGVGSGVASVVLFEANILALLAEVLSAVFAEVMQGKPEFTHHLIHKLKYHPGQIEAAAIMEHILDGSSYVKNAKLQQPDPLQKPKKERYALVTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVTSDKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELDNDLYSNGLPSNLSAGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSTEQHNQDVNSLGLISALKTVDAIEILKLMSSTYLVALCQAIDLRHLEEIFKNTVKSTVSRVALKTLSTEDKEEINPFRLTEEELVKVVDREYVFSYIDDPLNVRYPLMPKLKQVLYEQAHSSVINDKNVSLLTFEKIGAFEEELKSLLPKEIESARVAYENGNPTIPNRIKECRSYPLYKFVREELGIRLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLRDWNGVPIPI 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03120 709 CDD PAL-HAL 58 520 IPR001106 -
Viun8g03120 709 FunFam Phenylalanine ammonia-lyase 10 257 - -
Viun8g03120 709 MobiDBLite consensus disorder prediction 1 22 - -
Viun8g03120 709 Gene3D Fumarase/aspartase (Central domain) 259 704 - -
Viun8g03120 709 SUPERFAMILY L-aspartase-like 19 709 IPR008948 GO:0003824
Viun8g03120 709 Pfam Aromatic amino acid lyase 58 522 IPR001106 -
Viun8g03120 709 Gene3D - 10 257 IPR024083 -
Viun8g03120 709 MobiDBLite consensus disorder prediction 1 19 - -
Viun8g03120 709 Gene3D - 523 644 IPR023144 -
Viun8g03120 709 PANTHER HISTIDINE AMMONIA-LYASE 15 709 IPR001106 -
Viun8g03120 709 NCBIfam phenylalanine ammonia-lyase 19 699 IPR005922 GO:0005737|GO:0006559|GO:0016841
Viun8g03120 709 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 193 209 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03120 Viun-Chr8 37978804 37981392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03120 19 709 Monolignol Biosynthesis Gene Families AT2G37040 70.665 0.0 1041
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03120 K10775 - gmx:100787872 1207.97