Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun8g03116 | ATGGAAGAGAAGAAGACGACGGAGTATTCTTGCAACGCCGACGGCGTTTGCATGCGATGCAACGAGAAACCCCCTCTTTGCCAAACCCTCGTTTGCCAAACCTGCACCAGTTCATGGCACCTTCTTTGCCTCAATGCGCCGCCGGTCTCCAATTCCGACTCCGCATGGCACTGCCCCGACTGCACCGACGTCGACACCTCCGACCCCCCACCACCCGCTCCATCCACCGGCATTGTAACCGACGTCCGAGCTATTCATACAGACACATCTCTCTCCGACAAAGAAAAGGCACAGAGGTGCCAGCAGTTGCTCTCCGGCACCTCGAATCTGGCCCAGGACAACACTGATGCTCCCGTTATTTTCAACGGGAGTTTTAACTGCTCCATTTGCATGCAACTGCCTGAGAGGCCTGTCTCGACACCCTGTGGGCATAATTTCTGCTTGAGATGCTTTGAGAAATGTATGGCTCACAGAAGATTCGAATGTCCGAATTGTCGACGTCCACTATCTAGAACGTCATTTAGTCAGCCGAAGATTAATGTTCAGTTGGCTATTGCTATTCGATTGGCGAAGCAAGCGAAGTCTGAGGGGTCTTCTGAGCCACCACCATCAGTGCAGCACTTTTTGCGCAATCAGGATCGTCCAGATACTGCCTTCACCACTGATCGGGCGAAGAAAACTGGAAAAGCAAATGCTTGTTCTGGTAGGATTTTTGTTACGATCCCACCCGACCACTTTGGACCGATTCCAGCTGAAAATGATCCCGAAAAGAATCGCGGGGTTTTGGTTGGTGACACGTGGAATGACAGGATGGAATGTCGGCAATGGGGTGCTCATTTTCCTCATGTAGCTGGAATCGCTGGACAGAGCAGTTATGGTGCCCAATCTGTTGCTCTATCGGGTGGTTACGTGGACGATGAAGATCATGGGGAGTGGTTCCTTTACACTGGTAGTGGTGGAAGAGATCTGAGTGGAAACAAGCGCACGAACAAACTTCAATCATTTGACCAGAAATTTGAGAACATGAATGAATCCTTGAGAGTCAGCTGCCGAATGGGATATCCTGTTCGTGTTGTAAGGTCAAGCAAGGAAAAACGTTCCAACTATGCACCCGGCAAAGGGGTGCGTTATGATGGGATCTATAGAATAGAGAAATGCTGGCGCAAGAATGGAATTCAAGGCTGTAAGGTTTGTAGGTACTTGTTTGTGAGGTGTGACAATGAGCCAGCGCCGTGGGCAAGTGAACAAACTGGAGACCGTCCACGCCCACTGCCTGAGATCGGGGAGTTAGAATGTGCAATTGATATAACTGAAAGGAAGAACGCACCAGCGTGGGATTATGATGAGGAAAAGGAGTGCTGGACGTGGAAGAAGCCTCCCCCAGAAAGCAAGAAAGCTAGTGAGGCTGGAACAGTCAGAATGAAGCGGAAAGTGGACTTGGCTGCGGAGAGACAGAAGGTGTTAAAAGGGTTTTCTTGTGGAATATGCAAGAAGGTGATGCAGTACCCTATCACTACACCTTGTGCTCACAACTTCTGCAAGGCCTGTTTGCAGGGTGCTTTTGCTGGTAAAAGTTTAATGAGGGAAAGGTCACAAGGTGGACGCTCTTTGCGAGCACAAAAGAATGTTAAGACATGTCCCTTCCCTTTATGTACTACTGACATTGCTGACTTTCTTGAGAATCCACAGGTTAATAGAGAAATGATGAACCTGATAGAATCATGGGGAAAGAAGCCTGTAGAAGAAGAGCCTGAGGAGTCAAATGACAATGATGATGGAAATGAGAATGAGAATGAGGATGAAAGTATGGATGATGCTACCGAGGTTTCAACACCTTCTGGTTCTGATGATAATGTCCTAGAGGAAATTAATGACAATGATCTGAATCAGCAACATAAGCGAAGGAAGGAGGAGTGA | 1917 | 0.4841 | MEEKKTTEYSCNADGVCMRCNEKPPLCQTLVCQTCTSSWHLLCLNAPPVSNSDSAWHCPDCTDVDTSDPPPPAPSTGIVTDVRAIHTDTSLSDKEKAQRCQQLLSGTSNLAQDNTDAPVIFNGSFNCSICMQLPERPVSTPCGHNFCLRCFEKCMAHRRFECPNCRRPLSRTSFSQPKINVQLAIAIRLAKQAKSEGSSEPPPSVQHFLRNQDRPDTAFTTDRAKKTGKANACSGRIFVTIPPDHFGPIPAENDPEKNRGVLVGDTWNDRMECRQWGAHFPHVAGIAGQSSYGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNESLRVSCRMGYPVRVVRSSKEKRSNYAPGKGVRYDGIYRIEKCWRKNGIQGCKVCRYLFVRCDNEPAPWASEQTGDRPRPLPEIGELECAIDITERKNAPAWDYDEEKECWTWKKPPPESKKASEAGTVRMKRKVDLAAERQKVLKGFSCGICKKVMQYPITTPCAHNFCKACLQGAFAGKSLMRERSQGGRSLRAQKNVKTCPFPLCTTDIADFLENPQVNREMMNLIESWGKKPVEEEPEESNDNDDGNENENEDESMDDATEVSTPSGSDDNVLEEINDNDLNQQHKRRKEE | 638 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun8g03116 | 638 | SUPERFAMILY | RING/U-box | 123 | 175 | - | - | |
| Viun8g03116 | 638 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 478 | 610 | IPR013083 | - | |
| Viun8g03116 | 638 | Gene3D | - | 227 | 422 | IPR036987 | - | |
| Viun8g03116 | 638 | SMART | PHD_3 | 16 | 62 | IPR001965 | - | |
| Viun8g03116 | 638 | SMART | G9a_1 | 251 | 408 | IPR003105 | - | |
| Viun8g03116 | 638 | ProSiteProfiles | YDG domain profile. | 256 | 404 | IPR003105 | - | |
| Viun8g03116 | 638 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 194 | IPR013083 | - | |
| Viun8g03116 | 638 | SUPERFAMILY | PUA domain-like | 230 | 424 | IPR015947 | - | |
| Viun8g03116 | 638 | Pfam | Zinc finger, C3HC4 type (RING finger) | 126 | 171 | - | - | |
| Viun8g03116 | 638 | ProSiteProfiles | Zinc finger PHD-type profile. | 14 | 64 | IPR019787 | - | |
| Viun8g03116 | 638 | Pfam | SAD/SRA domain | 259 | 407 | IPR003105 | - | |
| Viun8g03116 | 638 | ProSiteProfiles | Zinc finger RING-type profile. | 127 | 166 | IPR001841 | - | |
| Viun8g03116 | 638 | SUPERFAMILY | FYVE/PHD zinc finger | 3 | 62 | IPR011011 | - | |
| Viun8g03116 | 638 | SMART | ring_2 | 493 | 549 | IPR001841 | - | |
| Viun8g03116 | 638 | SMART | ring_2 | 17 | 61 | IPR001841 | - | |
| Viun8g03116 | 638 | SMART | ring_2 | 127 | 165 | IPR001841 | - | |
| Viun8g03116 | 638 | MobiDBLite | consensus disorder prediction | 576 | 638 | - | - | |
| Viun8g03116 | 638 | ProSitePatterns | Zinc finger PHD-type signature. | 17 | 61 | IPR019786 | - | |
| Viun8g03116 | 638 | Pfam | RING-type zinc-finger | 493 | 533 | IPR027370 | - | |
| Viun8g03116 | 638 | ProSiteProfiles | Zinc finger RING-type profile. | 493 | 547 | IPR001841 | - | |
| Viun8g03116 | 638 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 3 | 590 | IPR045134 | - | |
| Viun8g03116 | 638 | MobiDBLite | consensus disorder prediction | 585 | 606 | - | - | |
| Viun8g03116 | 638 | ProSitePatterns | Zinc finger RING-type signature. | 508 | 517 | IPR017907 | - | |
| Viun8g03116 | 638 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 227 | 422 | - | - | |
| Viun8g03116 | 638 | SUPERFAMILY | RING/U-box | 488 | 576 | - | - | |
| Viun8g03116 | 638 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 75 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun8g03116 | Viun-Chr8 | 37944976 | 37948609 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun8g03116 | 7 | 587 | C2H2 Transcription Factor Family | AT5G39550 | 57.841 | 0.0 | 691 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun8g03116 | K10638 | - | gmx:100781044 | 873.618 |