Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03066 ATGTCTGTGAATCGAAAGCCTCCTGCTTCGAATGGTAGATTACAATCGAATATGAAGTCTTGGAAGGTGAATGAGCCTCTGCATGGGTCTAGTTCTCCCAGGACATGTAGGAGAAAACCCTTCCTCATTTGGTTCTTTGGCTTTGTTGCCATGGGGAGTGTTTGGTTCATCTTGAGTTTCAATACTAACTATTTGGTGAACAAGGAGAATGAAGCAATTTGTGAGAAGAGAGCAGGAATCTTGCTACAGCGGTACAATGTTAGTAGGGAACAGATTTATGCTTTGGCCTCCTTGTTCCCTGGATCAGATCAGATTTTATTCAACTGTATTGATGAAAGAAGACTTCGGATGCTGTTAAGTAGCGGCATGGTCAGCACTCCACAGTTAATGTGTCCAGAGAATCAGGAGTTAAGAACGGAGCATCTTAGTGTAGCGGACACTGTAGAACCTATAGAGCAATGTCCAATTCTCAATGATTATGTCCAGGCAAGGATTGAATTATCATTCCCATTCAAAAATTATGTATCATTGTCCTCGGGCACTTCACTTTCGACTGATTTGGTTAGTTATTTCTTCCGTGGAAAGAACATTGTGCAACCGTGGGAAATGAGGGTATCTGCAATTTGGGGTCATGTGAGTTCATCTAATTTAACTAAAGGATTCTGGTGGGTCCTCACTGGAATTATAATATCCTACTTCTGTTTACTACGGAGGAGTCAAAAGCAGAAGATGGTTCAGGGGCATCCAGCTCCACAACAAAAGCGGCTGAAGCATTTTCCACGGGGTCCATCAAGGGGTGCTGGGAGGTGGAGGAAAAAATTACTTGTTGTATTTGTGTCACTTGGAATAATTGGGTCCTTTTGGTTATTTTGGCACCTAAATAATGACATCATGCAGAGAAGAGAAGAAATGCTAACCAATATGTGTGATGAGAGAGCCCGAATGCTGCAAGATCAGTTTAATGTGAGCATGAACCATGTTCATGCTCTGGCTATCCTTGTATCCACATTTCACCATGGTAAACATCCTTCTGCAATTGACCAGAAAATTTTTGGAGAATATACAGAGAGTACAGCATTTGAAAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTTCATTCTGATAGGATGCATTTTGAGAGGTACCATGGGTGGACAATTAAGAAAATGGAAACAGAGAATGAGGCATTAGTCCAAGATTGTATTCCTGGAAATTTGGATCCAGCACCCATTCAAGATGAATATGCACCAGTGATATTTGCTCAAGAAACGGTTTCCCATATTGTATCTATTGACATGATGTCGGGGAAGGAGGACCGCGAGAATATTTTGCGAGCAAGGGCATCTGGAAAGGGCGTTCTGACATCCCCTTTTAAACTACTAAAGTCCAATCACTTGGGTGTTGTACTTACATTTGCGGTCTATAACACTAATCTTCCTTTAGATGCTACACCAGAGCAACGTATTGAAGCAACTGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCATTGGTGGACAAACTTCTGCATCAACTTGCCAGCAAGCAAACCATTGTTGTAAATGTTTATGACACAACTGATGCATCTGCACCTATCACAATGTATGGTACTGATGTTACTGACACTGGCCTACTACACATAAGCAGCCTAGATTTTGGGGATCCGCTCCGAAAACATGAGATGCACTGCAGGTTCAAGCAGAGGCCTCCACTACCTTGGACAGCAATCAATGCATCAGGGGGGGTGTTTGTTATTACTTTGCTGGTGGGTCATATCTTTTATGCAGCAATAAATAGAATAATAAAAGTTGAGGATGGCTATCGTGTAATGAGTGAGCTGAAAAGCCGTGCTGAGGCTGCAGATGTGGCAAAATCCCAGTTTCTTGCTACAGTTTCACATGAGATAAGGACTCCAATGAACGGTGTTTTAGGCATGCTGCAAATGTTGATGGACACCGAGCTTGACAAAAAACAGATGGATTATGCTCAAACTGCACATGATAGTGGTAAAGATCTCATATCAGTCATAAATGAGGTTCTTGATCAGGCTAAGATTGAGGCTGGAAAGCTTGAACTTGAAGCTGTAGCTCTTGACCCACGTGCTATTCTGGATGAAGTTTTATCTCCTTTCTCTGAAAAATCTAAAGGAGTAGAGCTGGCTGTTTATGCATCCAATCAAGTACCGCAAGTTGTAATTGGTGATCCTAAACGATTCCGGCAAGTAATTACAAATCTTGTCAGCAATTCAGTCAAGTTCAATCATGATAAAGGACATGTGTTTGTCTCTGTTCATCTGGCAAATGAAGTGAAGAATCCACTTCATGTTATGGATCCAGTGCTGAGTGAAGGCATAAACATCAATCAAGATGTATCAAACAGAACATATGATACATTAAGTGGGTTTCCTGTATGCAACAAATGGAAAAGTTGGGCAAATTTTGAAAAGTTAAGTAGAGTAGATGATCCTGATATTATTCAATTATTAGTAATAGTTGAAGACACAGGTACAGGAATTCCTACAGATGCACAAAGCCGCATATTCACGCCTTTTATGCAGGCTGATAGTTCCCCCTCCCGAACGTATGGTGGAACTGGAATAGGACTGAGCATTAGTAAGTGCCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGGAATTGGAAGTACATTTTCCTTTACTGGAACTTTCAGAAAAGGAGAAAGCATTTCTCTGGATGCAATGTGGCATAATAACAGTTTTGGTTCAGAGTTCCAAGGATTGAGAGCATTAGTGGTAGACAGAAGAAAAATCCGAGCTGAGGTCACAAGATATCATCTGCAGAGATTGGGAATGTCTGTGGATATAACTAATAGTCTGAATTCTCAATGCTCTTGTCTATCTAGTACTTGCGACATGAGTATGTCAGGCCAGTTGGCCATGATTTTGATAGACAAGGATGCTTGGGACAAAGAATGTCTTATCTTATGCAAAATCAAGAAGCTTAGACAGAATGGCATCAAAAGGGATCCAATAGACTTACCGAAGATTTTTCTCCTGGACACCCACCCTCAAACCGACGAACATGATGAGCTAAAGTCGGTTGGTATCATAGATGATGTACTGATGAAGCCTCTTTGGCTTAGTTCTTTGGTTCACTCTTACAGAGAGTCCCTTGGTGCTGAAAAAAATCAAGTACATAGGAAGAAAGTATCCAAACTTGGGAGTTTATTAATGAACAAACAAATTTTGGTGGTTGATGATAATGCAGTGAACAGAAGAGTTGCAAAAGGCTTTCTACAGAAATATGGCGCAAAAGTTACTTCTGTGGAGAGTGGCATGGCTGCTCTAAAGGTGCTTAAAGTGCCACATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGCAACAAGGGAAATCCGCAGAATGGAGAGAGAGGTAAATGAGGAACTTGCATGTGAGCAATCATCTGCAGAGATGTATGGAAACATATCTTATTGGCACATTCCAGTACTAGCAATGACAGCAGATGCAACTCAAAGTTCAAATGAAGAGTGCAGAAACTGCGGAATGGATGACTACGTGACAAAGCCATTTGAAGAAGAGCAGCTTTATATGGCAATGACACGATTCTTCCAACCAGATTCATAG 3672 0.4123 MSVNRKPPASNGRLQSNMKSWKVNEPLHGSSSPRTCRRKPFLIWFFGFVAMGSVWFILSFNTNYLVNKENEAICEKRAGILLQRYNVSREQIYALASLFPGSDQILFNCIDERRLRMLLSSGMVSTPQLMCPENQELRTEHLSVADTVEPIEQCPILNDYVQARIELSFPFKNYVSLSSGTSLSTDLVSYFFRGKNIVQPWEMRVSAIWGHVSSSNLTKGFWWVLTGIIISYFCLLRRSQKQKMVQGHPAPQQKRLKHFPRGPSRGAGRWRKKLLVVFVSLGIIGSFWLFWHLNNDIMQRREEMLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFERYHGWTIKKMETENEALVQDCIPGNLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTDASAPITMYGTDVTDTGLLHISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASGGVFVITLLVGHIFYAAINRIIKVEDGYRVMSELKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDKKQMDYAQTAHDSGKDLISVINEVLDQAKIEAGKLELEAVALDPRAILDEVLSPFSEKSKGVELAVYASNQVPQVVIGDPKRFRQVITNLVSNSVKFNHDKGHVFVSVHLANEVKNPLHVMDPVLSEGININQDVSNRTYDTLSGFPVCNKWKSWANFEKLSRVDDPDIIQLLVIVEDTGTGIPTDAQSRIFTPFMQADSSPSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKGESISLDAMWHNNSFGSEFQGLRALVVDRRKIRAEVTRYHLQRLGMSVDITNSLNSQCSCLSSTCDMSMSGQLAMILIDKDAWDKECLILCKIKKLRQNGIKRDPIDLPKIFLLDTHPQTDEHDELKSVGIIDDVLMKPLWLSSLVHSYRESLGAEKNQVHRKKVSKLGSLLMNKQILVVDDNAVNRRVAKGFLQKYGAKVTSVESGMAALKVLKVPHNFDACFMDLQMPEMDGFEATREIRRMEREVNEELACEQSSAEMYGNISYWHIPVLAMTADATQSSNEECRNCGMDDYVTKPFEEEQLYMAMTRFFQPDS 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03066 1223 SUPERFAMILY CheY-like 1080 1219 IPR011006 -
Viun8g03066 1223 SMART REC_2 1081 1215 IPR001789 GO:0000160
Viun8g03066 1223 ProSiteProfiles CHASE domain profile. 342 566 IPR006189 -
Viun8g03066 1223 SMART HisKA_10 627 692 IPR003661 GO:0000155|GO:0007165
Viun8g03066 1223 FunFam Histidine kinase 4 599 690 - -
Viun8g03066 1223 CDD HisKA 627 688 IPR003661 GO:0000155|GO:0007165
Viun8g03066 1223 FunFam Histidine kinase 4 346 573 - -
Viun8g03066 1223 Gene3D - 691 906 IPR036890 -
Viun8g03066 1223 Gene3D - 1076 1222 - -
Viun8g03066 1223 Pfam CHASE domain 345 539 IPR006189 -
Viun8g03066 1223 Gene3D - 602 690 - -
Viun8g03066 1223 CDD HATPase_EvgS-ArcB-TorS-like 742 901 - -
Viun8g03066 1223 ProSiteProfiles Response regulatory domain profile. 1082 1219 IPR001789 GO:0000160
Viun8g03066 1223 Gene3D - 293 345 - -
Viun8g03066 1223 Pfam Response regulator receiver domain 1083 1214 IPR001789 GO:0000160
Viun8g03066 1223 Pfam His Kinase A (phospho-acceptor) domain 627 692 IPR003661 GO:0000155|GO:0007165
Viun8g03066 1223 ProSiteProfiles Histidine kinase domain profile. 634 906 IPR005467 -
Viun8g03066 1223 ProSiteProfiles Response regulatory domain profile. 929 1059 IPR001789 GO:0000160
Viun8g03066 1223 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 737 901 IPR003594 -
Viun8g03066 1223 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 613 693 IPR036097 GO:0000155|GO:0007165
Viun8g03066 1223 SMART CHASE_2 342 541 IPR006189 -
Viun8g03066 1223 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 681 901 IPR036890 -
Viun8g03066 1223 Gene3D CHASE domain 346 573 IPR042240 -
Viun8g03066 1223 PRINTS Bacterial sensor protein C-terminal signature 866 884 IPR004358 GO:0016310|GO:0016772
Viun8g03066 1223 PRINTS Bacterial sensor protein C-terminal signature 890 903 IPR004358 GO:0016310|GO:0016772
Viun8g03066 1223 PRINTS Bacterial sensor protein C-terminal signature 831 845 IPR004358 GO:0016310|GO:0016772
Viun8g03066 1223 PRINTS Bacterial sensor protein C-terminal signature 849 859 IPR004358 GO:0016310|GO:0016772
Viun8g03066 1223 SMART HKATPase_4 737 906 IPR003594 -
Viun8g03066 1223 CDD REC_hyHK_CKI1_RcsC-like 1083 1215 - -
Viun8g03066 1223 SUPERFAMILY CheY-like 924 1057 IPR011006 -
Viun8g03066 1223 PANTHER TWO-COMPONENT HISTIDINE KINASE 276 1212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03066 Viun-Chr8 37724791 37734006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03066 67 1221 Miscellaneous Gene Families AT5G35750 57.998 0.0 1291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun8g03066 CHASE 4.7e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03066 K14489 - gmx:100805107 2083.92