Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03064 ATGCACCCTCCACGACAGCAGTCACAAGGTGGTGAAGGACTACGAACTTCTCTGTCTCTAGTTTCTTCAGATCCACGCCTTTCCCTTGACGAGCCTAGATCAAACACTGGCAATCTCCGTGAATCTCCGACTGAAAGTGCCAGTTCTCGGGAAATTTGGCCTGTTGCTGCAGCAATAAAAAGGGAGAGTGATTGCCCTGATCAGGCAGTTATACGTCGTGTTTCTGGTTCTGACAAAATTACTCTTCATGACGTTGCAAGAGAACGAGTTGATATAATATGTGAAAAAATGGTTCATCTACCTTGCGAATTTCTTGACGAACTGAAAAACGAACTTCGAGTTATCCTTGAAGGAGGTAATGGCTCGCAACATAGAGAGGAATTTTTTATTTTGCAGAAGCTTGTTCAGAGCAGATCTGATTTAACAACCAAGACATTGGCAAGAACACATCGTGTGCAGCTCGAAATCCTTGTTGCCATAAATACTGGAATTCAGGGATTTTTACATCCTAGCATCAATCTATCTCAGGCTTCATTGATTGAGATATTTCTATATAAGAGATGCAGAAACCTAGCTTGTGGGAGCCAGCTTCCTGCTGAAGATTGTACCTGTGAGACATGCACCAATGGAAATGGTTTCTGCAATCTTTGCATGTGTGTTATCTGCAGTAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACTGATTGTGCCATTCGCGAGCAACTTATTTGTATGGGCCCTTCTACACAGAATGGAACAGGGCCAAGCGAAATGGTTTTTAAGTGTCAAGCATGCAATAGGACTTCAGAACTGCTGGGTTGGGTTAAAGATGTCTTTCAGCATTGTGCACTGTCATGGGATGGAGAGGCCCTGATTAGGGAACTTGATTTTGTCAGTAGGATCTTTCATGGAAGTAAAGACCCACGAGGGAGGAAACTCCATTGGAAGTCTGACGATCTCAAGGAAAATTTAAGAAGTGGCAAAGTGGAAACTACGGCTGCATGCACAGCAATATTGATGTTTTTCAAAGAGCTTGAGCTGGACTCTCAAAAGACCCTGGAAAATGTTGAAAGTGGAAGTGGAAGACTGATTGTTCCACAGGAAGCATGCAATAGAATTTCAGAGGTGGTGCATGAGGCTGTAAGAAATATGGAAATGGTAGCCAATGAGAAGATGAGAATGTTCAAGAAGGCTCGGTTGTCTTTTGATGCTTGTGAACGTGAATTAGCAGACAAGGCCAGAGAAGCAGGAGAACTAAAAATGGATAGGCAAAAAAAGAAGTTAGAGATTGAAGAACTAGAGAGAATTGTGAGGCTTAAAAGTGCAGAGGCTGATATGTTCCAGACGAAGGCTAATGAAGCTAAAAGAGAAGCTGAGCGGCTCCAGAGGATTCTTCTTGCCAAGTCTGATAAATCAGAAGAAGAATATACCAGCAATTATTTGAAGCAAAGATTAAGTGAGGCCGAGGCTGAGAAGCAGTATCTGTATGAGAAGATCAAAATGCAGGAGTCTTCGCGTATATTGCAAAGCAGTGGTGGCGGTGACCCCTTGGTGTTTTCCAAAATCCATGATCTTCTCTATAGTGTTCCTCCCAGTGCAGATGGCCCATCTAATGACGGCCATCCTTTTCGAACAAACCCATAA 1680 0.4298 MHPPRQQSQGGEGLRTSLSLVSSDPRLSLDEPRSNTGNLRESPTESASSREIWPVAAAIKRESDCPDQAVIRRVSGSDKITLHDVARERVDIICEKMVHLPCEFLDELKNELRVILEGGNGSQHREEFFILQKLVQSRSDLTTKTLARTHRVQLEILVAINTGIQGFLHPSINLSQASLIEIFLYKRCRNLACGSQLPAEDCTCETCTNGNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSTQNGTGPSEMVFKCQACNRTSELLGWVKDVFQHCALSWDGEALIRELDFVSRIFHGSKDPRGRKLHWKSDDLKENLRSGKVETTAACTAILMFFKELELDSQKTLENVESGSGRLIVPQEACNRISEVVHEAVRNMEMVANEKMRMFKKARLSFDACERELADKAREAGELKMDRQKKKLEIEELERIVRLKSAEADMFQTKANEAKREAERLQRILLAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKMQESSRILQSSGGGDPLVFSKIHDLLYSVPPSADGPSNDGHPFRTNP 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03064 559 MobiDBLite consensus disorder prediction 1 49 - -
Viun8g03064 559 SMART PHD_3 218 278 IPR001965 -
Viun8g03064 559 Coils Coil 428 483 - -
Viun8g03064 559 CDD PHD_OBE1_like 218 277 IPR047578 -
Viun8g03064 559 PIRSF UCP025218 1 545 - -
Viun8g03064 559 Pfam Coiled-coil region of Oberon 408 538 IPR032535 -
Viun8g03064 559 Pfam PHD - plant homeodomain finger protein 188 311 IPR032881 -
Viun8g03064 559 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 28 538 IPR004082 -
Viun8g03064 559 MobiDBLite consensus disorder prediction 1 51 - -
Viun8g03064 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 179 200 IPR004082 -
Viun8g03064 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 225 245 IPR004082 -
Viun8g03064 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 96 118 IPR004082 -
Viun8g03064 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 138 153 IPR004082 -
Viun8g03064 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 443 463 IPR004082 -
Viun8g03064 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 153 168 IPR004082 -
Viun8g03064 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 298 317 IPR004082 -
Viun8g03064 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 482 504 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03064 Viun-Chr8 37707580 37710446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03064 188 290 PHD Gene Family AT5G57380 31.731 3.64e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03064 - - pvu:PHAVU_008G285600g 1017.3