Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03058 ATGGCCACCACTGCTTTCCAGCAATCAGCATTCTCTAGTCAAACAGCTCTGAAACAGGTCAATGAGTTCGTCCGCAAAACCGGTGGCTCCGGCAAAGGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCCGAGCATTTGGCCTACTCTACACTCCTCGCGAACCTTCCCTCGGAATCGAAGACTCGTTGTCAAAGCCTCTTCTTCTTCTTCTTCTGCCGACGACATTTCTCGGAGCAGGAGACGCTTCCTCGCCGAAACCGCCGCAATCTCGGTTTCGCTTCCTCACTTTCCGGCGAGGGCCGAAGACACGCTCTCGGAGTGGGAGAGAGTGTACCTCCCTATCGACCCCGGCGTCGTGCTTCTCGACATCGCGTTTGTCCCCGACGACCCCAACCACGGTTTTCTTCTCGGGACGAGGCAAACAATTCTTGAGACGAAGGACGGAGGAAACACTTGGGCTCCGCGTTCGATTCCCTCTGCCGAAGATGAAGATTTCAACTATCGGTTTAATTCTATCAGTTTCAAGGGGAAGGAAGGGTGGATAGTTGGAAAACCTGCGATTCTGTTGTACACTGCTGATGCTGGAGAAAGCTGGGAGAGGATACCTCTCAGTGCTGAACTTCCAGGGGATATGGTGTACATAAAAGCGACTGGTGAGAAGAGTGCAGAGATGGTGACTGACGAAGGTGCAATATATGTCACTGCTAACAGGGGTTACAACTGGAGAGCTGCTGTTCAGGAAACTGTGTCAGCTACTCTTAACAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTATTACACTGGGACTTTCAACACTGTTAATCGCTCTCCAGATGGAAGGTATGTTGCAGTCTCAAGTCGAGGCAACTTCTACTTAACCTGGGAGCCTGGTCAGCCATTCTGGCAGCCACATAATAGAGCAGTTGCCCGAAGAATACAGAACATGGGATGGAGAGCTGACGGTGGTCTGTGGCTTCTTGTTCGTGGAGGTGGTCTTTATCTCAGCAAGGGCACCGGGTTAACTGAAGAATTTGAGGAGGTTCCTGTTCAAAGCAGGGGTTTTGGCATTCTTGATGTTGGATATCGTTCAACGGATGAAGCTTGGGCAGCAGGAGGAAGTGGTATTCTTTTGAGAACTACCAATGGTGGCAAGTCATGGATCCGTGACAAAGCTGCCGACAACATTGCTGCAAATTTATACTCAGTGAAGTTCATTGATGAGAAGAAGGGATTTGTATTGGGGAATGATGGAGTCTTGCTTCGCTTCCTTGGGTAG 1287 0.5043 MATTAFQQSAFSSQTALKQVNEFVRKTGGSGKGRTNMRRTVKSAPPSIWPTLHSSRTFPRNRRLVVKASSSSSSADDISRSRRRFLAETAAISVSLPHFPARAEDTLSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTADAGESWERIPLSAELPGDMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGKSWIRDKAADNIAANLYSVKFIDEKKGFVLGNDGVLLRFLG 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03058 428 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 57 428 - -
Viun8g03058 428 Pfam Photosynthesis system II assembly factor YCF48 106 426 IPR028203 -
Viun8g03058 428 SUPERFAMILY Oligoxyloglucan reducing end-specific cellobiohydrolase 109 427 - -
Viun8g03058 428 MobiDBLite consensus disorder prediction 24 46 - -
Viun8g03058 428 Gene3D - 168 393 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03058 Viun-Chr8 37679572 37683878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03058 1 49 Chloroplast and Mitochondria Gene Families AT2G05100 67.347 3.47e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03058 - - vra:106763078 823.542