Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03026 ATGCAATCAAAATCTGAAACTACCAATCCGCCTAGGTCTAATCCACAATCCTTTACGCCTAGCAATGTTTATTCTGAACCCTGGTGGCGTGGTATTCATCCTCATTACAAACCTGTTCCTCCACAAGCAATGTCAGGAGTGAACGCATCAAATTCATCATCACTTGAACGTCCTCCACAAGCAATGTCAGTAGTGAACGCATCAAATTCATCATCACTTGAACGTCCTAATGGCGATTCAGAATCCAGTGAAGATCAATCTTTGTCCAACAATGGGGTGAATGAGGAAGACGATGATGTCACCAAAGAATCACAACCCACTGCTCCTAATCAACCAGGAAGTTATGGACAAGACCAACAAGCCATGCTGCATTCTTCATCATCTGCACCTTCTAGGCGTGATGACTGCGTTCCACCACATGCTCCACAACTAGAACTTATTAGCCATTCATTTGGATATGCTCCTTTTATAGGAATGCCTCATGCTAGAATGGCTTTGCCGCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAACTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGTCATCAGCATGCTATGAGAAGAGCAAGAGGTAACGGAGGGCGTTTTGCAAAGAAAACTGAGGTCGAAGCTTCCAAACATACGAACAAGGAAAAGAATATGGGTGCTGCAGGTCCAGTTTCAGTTAATTCATCTGATTCTGCTAAGACATGGAACTCTGCCAGTGTGCAACAAGACGCAAGAGGTTCTCAGGTGCATGAGAGATTTGAGAAACACAACTATGCAAATGTTTTGCAGTCATCATCTGCGTTCTGTTTGCACTCCGGTGAGAGAGTAGAGGAAGGGGACTGTTCAGGTCAACAACGGGGAAGCATCTCCTCTGAGCAAAGCTCACAGAGGCGTCTTGCTATTCAGTAA 993 0.4441 MQSKSETTNPPRSNPQSFTPSNVYSEPWWRGIHPHYKPVPPQAMSGVNASNSSSLERPPQAMSVVNASNSSSLERPNGDSESSEDQSLSNNGVNEEDDDVTKESQPTAPNQPGSYGQDQQAMLHSSSSAPSRRDDCVPPHAPQLELISHSFGYAPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTEVEASKHTNKEKNMGAAGPVSVNSSDSAKTWNSASVQQDARGSQVHERFEKHNYANVLQSSSAFCLHSGERVEEGDCSGQQRGSISSEQSSQRRLAIQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03026 330 MobiDBLite consensus disorder prediction 311 330 - -
Viun8g03026 330 MobiDBLite consensus disorder prediction 44 94 - -
Viun8g03026 330 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Viun8g03026 330 MobiDBLite consensus disorder prediction 302 330 - -
Viun8g03026 330 MobiDBLite consensus disorder prediction 104 132 - -
Viun8g03026 330 Gene3D - 171 233 - -
Viun8g03026 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 290 IPR001289 GO:0003700|GO:0006355
Viun8g03026 330 MobiDBLite consensus disorder prediction 235 277 - -
Viun8g03026 330 MobiDBLite consensus disorder prediction 250 274 - -
Viun8g03026 330 MobiDBLite consensus disorder prediction 1 140 - -
Viun8g03026 330 MobiDBLite consensus disorder prediction 1 24 - -
Viun8g03026 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Viun8g03026 330 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Viun8g03026 330 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Viun8g03026 330 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Viun8g03026 330 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03026 Viun-Chr8 37474613 37478100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03026 97 330 CCAAT-HAP2 Transcription Factor Family AT3G20910 49.615 7.12e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Viun8g03026 CBFB_NFYA 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03026 K08064 - gmx:102664020 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01042 6 19919557 19923691 Viun8g03026 8 37474613 37478100 PCT