Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03008 ATGTCTTTAAGCTTGAGGAATCACTCACCTTCTTCCAAAATTTTCTCCCTCTCTTTGCTTCTTTTATTTCATTGTTGTTACTCCCAGCTTAATGAGCAAGGCCAAGCTCTTTTAGCATGGAAAAACAGTTTAAACAGTTCTGCAGATGCATTAGCATCTTGGAATCCTTCCAGCACAAGCCCATGCAATTGGTTTGGGGTGCACTGCAACTTACAAGGAGAGGTGGTTGAGATAAACCTGAATTCAGTTAACTTGCAAGGCTCGTTGCCTTCAAATTTTCAACTTTTCAGGTCCTTGAAGATTCTTGTCCTCTCAACAGCCAACATCACAGGGAGGATTCCAAAGGAGATTGGAGAGTGTAAAGAGCTCACTTTCATTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGGCTGAGCAAACTGCAGACTTTGGCTCTGCATACCAACTTTCTTGAAGGTAACATTCCATCCAGCATAGGAAATTTATCCAGTCTTGTGAACTTGACACTCTATGACAACAAACTGAGTGGAGAAATTCCAAAGAGTATTAGCTCATTAACTGAGCTCCAAGTGTTGAGAGTAGGAGGGAACACAAACCTTAAGGGTGAGGTGCCATGGGATATTGGAAACTGCACCAACTTGGTGGTGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAATCTTCCTTCTTCAATAGGGATGCTGAAAAGGATTCAGACCATAGCCATTTACACAACTCTGCTGTCAGGCTCTATACCAGAAGCGATAGGGAAGTGCAGTGAGTTGCAGAACCTGTACTTGTATCAGAACTCAATCTCTGGTTCAATCCCAAGCCAAATTGGAGAGCTCAGGAAGCTGCAGAATCTTCTACTGTGGCAAAACAATATAGTTGGTACAATCCCAGAAGAGCTTGGAAGCTGCACTCAACTGGAAGTCATAGACATGTCAGAAAATCTTCTCACAGGTAGCATACCAGCCAGTTTTGGTAAGCTATCAAATCTGCAAGGGCTTCAACTGAGTGTTAACAAGCTTTCAGGCATTATACCTCCTGAAATCACAAACTGCACTTCCCTGACTCAACTGGAAGTTGACAATAATGCCATCTCTGGAGAGATTCCTCCTGTTATCGGCAACTTGAGAAGCTTGACTCTCTTCTTTGCATGGCAGAACAAGCTGACAGGAAAAATCCCAGATAGTCTTTCACAGTGCCAAGATCTTCAGGCACTTGATCTCTCTTACAACAACTTAACTGGTCCAATACCCAAACAACTTTTTGGACTGAGGAACCTCACTAAACTGTTGCTTCTTTCCAATGATTTGTCTGGCTTTATACCACCCGAGATAGGTAATTGCACAAGCCTCTACAGGTTGAGGTTAAATCATAATAGATTGTCAGGTACAATTCCATATGAGATCACCAACTTGAAGAATTTGAACTTTTTGGACGTGAGCAGCAATCATCTTGTAGGGGAAATTCCTCCTACACTATCCAGATGCCAAAATCTTGAGTTTCTGGACCTTCACTCAAATAGTATCATTGGCTCAATTCCAAACAATCTGCCCAAAAACCTGCAGTTAATCGACCTCTCAGACAACAGGCTAACAGGTGAACTGAACCATTCCATTGGTTCATTAACCGAGTTAGCCAAACTCAACTTGGGAAACAATCAACTCAGAGGAAGCATACCTGCTGAGATCCTATCTTGCTCCAAGTTACAGCTTCTGGACTTGGGAAGCAATAGTTTCTCTGGAGAAATTCCCAAGGAAATTGCTCAAATTCCTTCACTAGAAATCCTTCTCAATCTCAGCTGTAACCAGTTTTCTGGTGAAATTCCACCCCAGTTCTCCGGTCTGAGAAAACTTGGAGTGCTTGACCTCTCCCACAATAAGCTCTCAGGGAAGTTGGATGCTCTCTCTGATCTTCAAAACCTTGTTTCGTTAAATGTTTCCTTCAATGACTTCACTGGAGAATTGCCTAACACCCCATTCTTCAGGAAGCTCCCTCTCAGTGATCTTACAGGAAATGATGGCCTGTACATTGTTGGTTCTGTAACTCCAGCAGACAGAAAGGAAGCCAAGGTTCATGCCAGGTTGTTCATGAAGATTATATTTTCCATTCTCTTAAGCACCAGTGCAGTACTGGTACTACTCACAGTCCATGTCTTGATTCGTGCTCATGTTTCTAACAAAGCACTCATGGGAAACAACAATTGGGTGTTAACTCTGTATCAGAAGTTTGAATTCTCTGTTGACGATATTGTCCGGAATTTAACTTCATCCAATGTGATTGGCACTGGAAGTTCTGGAGTTGTGTACAAGGTTACAGTTCCAGGTGGCCAAACACTAGCAGTTAAAAAGATGTGGTCATCGGCAGAGTCAGGAGCATTTACTTCTGAAATTCAAACACTAAGTTCAATTAGACATAACAACATCATCAAGCTTCTGGGTTGGGGATCCAGCAAGAACATGAAGCTGCTGTTTTATGAGTACCTTCCTAACGGAAGCTTGAGCTCATTACTTCATGGTTCAGGAAAGGGAAAAGCAGAATGGGAAATCAGATATGATGTTATGGTAGGAGTGGCTAATGCACTTGCATATTTGCACCATGATTGTGAGCCTTCGATATTGCATGGAGATGTCAAAGCCATGAACGTGTTGTTAGGTCCTGGCTATAAGCCTTACCTATCTGACTTTGGCCTAGCTAGAATTGCAAGTGAAAATGGTGATTGTACTAATTCCAAGCCAGTTCAAAGACCCTACCTTGCTGGCTCCTACGGGTACATGGCTCCAGAACATGCATCTATGCAGCAGATGACTGAGAAGAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGTCCTGACAGGGAGGCACCCCCTTGACCCAACACTTCCTGGGGGTGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTAGCAAGCAAAGGTGACCCATCTGAAATTCTTGACCCAACACTGAGAGGGAGAACTGATTCCACTGTGCATGAAATGCTACAAACTCTAGCTGTGTCATTTTTATGTGTCAGCACCAGAGCTGAGGACCGTCCAACAATGAAGGACACTGTTGCAATGCTTAAGGAAATCCGATCTGTTGAGGCACCAACCACAACAGGTTCTGATGCATTGAAGGGAGTTTCATCAGTGCATGCTTCTGCATCACCTCTTAAAACTGTAGTTTCACATGGAAATTCCAAATTTTCCTTTAACTTTTCTGAGGGCTCAATCTGTTGA 3273 0.432 MSLSLRNHSPSSKIFSLSLLLLFHCCYSQLNEQGQALLAWKNSLNSSADALASWNPSSTSPCNWFGVHCNLQGEVVEINLNSVNLQGSLPSNFQLFRSLKILVLSTANITGRIPKEIGECKELTFIDLSGNSLFGEIPEEICRLSKLQTLALHTNFLEGNIPSSIGNLSSLVNLTLYDNKLSGEIPKSISSLTELQVLRVGGNTNLKGEVPWDIGNCTNLVVLGLAETSISGNLPSSIGMLKRIQTIAIYTTLLSGSIPEAIGKCSELQNLYLYQNSISGSIPSQIGELRKLQNLLLWQNNIVGTIPEELGSCTQLEVIDMSENLLTGSIPASFGKLSNLQGLQLSVNKLSGIIPPEITNCTSLTQLEVDNNAISGEIPPVIGNLRSLTLFFAWQNKLTGKIPDSLSQCQDLQALDLSYNNLTGPIPKQLFGLRNLTKLLLLSNDLSGFIPPEIGNCTSLYRLRLNHNRLSGTIPYEITNLKNLNFLDVSSNHLVGEIPPTLSRCQNLEFLDLHSNSIIGSIPNNLPKNLQLIDLSDNRLTGELNHSIGSLTELAKLNLGNNQLRGSIPAEILSCSKLQLLDLGSNSFSGEIPKEIAQIPSLEILLNLSCNQFSGEIPPQFSGLRKLGVLDLSHNKLSGKLDALSDLQNLVSLNVSFNDFTGELPNTPFFRKLPLSDLTGNDGLYIVGSVTPADRKEAKVHARLFMKIIFSILLSTSAVLVLLTVHVLIRAHVSNKALMGNNNWVLTLYQKFEFSVDDIVRNLTSSNVIGTGSSGVVYKVTVPGGQTLAVKKMWSSAESGAFTSEIQTLSSIRHNNIIKLLGWGSSKNMKLLFYEYLPNGSLSSLLHGSGKGKAEWEIRYDVMVGVANALAYLHHDCEPSILHGDVKAMNVLLGPGYKPYLSDFGLARIASENGDCTNSKPVQRPYLAGSYGYMAPEHASMQQMTEKSDVYSFGVVLLEVLTGRHPLDPTLPGGGAHLVQWVRNHLASKGDPSEILDPTLRGRTDSTVHEMLQTLAVSFLCVSTRAEDRPTMKDTVAMLKEIRSVEAPTTTGSDALKGVSSVHASASPLKTVVSHGNSKFSFNFSEGSIC 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03008 1090 FunFam Leucine-rich receptor-like protein kinase family protein 30 188 - -
Viun8g03008 1090 ProSitePatterns Protein kinases ATP-binding region signature. 769 792 IPR017441 GO:0005524
Viun8g03008 1090 Pfam Leucine rich repeat 606 660 IPR001611 GO:0005515
Viun8g03008 1090 Pfam Leucine rich repeat 315 374 IPR001611 GO:0005515
Viun8g03008 1090 SUPERFAMILY L domain-like 258 522 - -
Viun8g03008 1090 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 189 280 - -
Viun8g03008 1090 SUPERFAMILY Protein kinase-like (PK-like) 753 1039 IPR011009 -
Viun8g03008 1090 SMART LRR_typ_2 168 192 IPR003591 -
Viun8g03008 1090 SMART LRR_typ_2 433 457 IPR003591 -
Viun8g03008 1090 SMART LRR_typ_2 337 361 IPR003591 -
Viun8g03008 1090 SMART LRR_typ_2 289 313 IPR003591 -
Viun8g03008 1090 SMART LRR_typ_2 551 575 IPR003591 -
Viun8g03008 1090 SMART LRR_typ_2 506 529 IPR003591 -
Viun8g03008 1090 SMART LRR_typ_2 624 647 IPR003591 -
Viun8g03008 1090 SMART LRR_typ_2 481 505 IPR003591 -
Viun8g03008 1090 Gene3D Transferase(Phosphotransferase) domain 1 837 1057 - -
Viun8g03008 1090 SUPERFAMILY L domain-like 31 303 - -
Viun8g03008 1090 Gene3D Ribonuclease Inhibitor 606 690 IPR032675 -
Viun8g03008 1090 FunFam Putative LRR receptor-like serine/threonine-protein kinase 605 690 - -
Viun8g03008 1090 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 732 836 - -
Viun8g03008 1090 Gene3D Ribonuclease Inhibitor 363 605 IPR032675 -
Viun8g03008 1090 ProSiteProfiles Leucine-rich repeat profile. 626 648 IPR001611 GO:0005515
Viun8g03008 1090 SMART serkin_6 763 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g03008 1090 Gene3D Ribonuclease Inhibitor 297 362 IPR032675 -
Viun8g03008 1090 ProSiteProfiles Protein kinase domain profile. 763 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g03008 1090 FunFam Leucine-rich receptor-like protein kinase family protein 332 604 - -
Viun8g03008 1090 Gene3D Ribonuclease Inhibitor 30 184 IPR032675 -
Viun8g03008 1090 Gene3D Ribonuclease Inhibitor 185 286 IPR032675 -
Viun8g03008 1090 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Viun8g03008 1090 SUPERFAMILY L domain-like 456 671 - -
Viun8g03008 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 881 893 IPR008271 GO:0004672|GO:0006468
Viun8g03008 1090 SMART LRR_sd22_2 481 510 - -
Viun8g03008 1090 SMART LRR_sd22_2 527 553 - -
Viun8g03008 1090 SMART LRR_sd22_2 313 342 - -
Viun8g03008 1090 SMART LRR_sd22_2 265 297 - -
Viun8g03008 1090 SMART LRR_sd22_2 168 194 - -
Viun8g03008 1090 SMART LRR_sd22_2 624 649 - -
Viun8g03008 1090 PANTHER UNNAMED PRODUCT 18 525 - -
Viun8g03008 1090 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 837 1056 - -
Viun8g03008 1090 Gene3D Phosphorylase Kinase; domain 1 732 836 - -
Viun8g03008 1090 PRINTS Leucine-rich repeat signature 624 637 - -
Viun8g03008 1090 PRINTS Leucine-rich repeat signature 412 425 - -
Viun8g03008 1090 Pfam Protein kinase domain 766 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03008 Viun-Chr8 37386376 37390280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03008 26 1089 Receptor kinase-like Gene Family AT5G56040 64.399 0.0 1357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun8g03008 Pkinase 7.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03008 - - gmx:100813139 1838.54