Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g03005 ATGAATTCTAGGTGCTTTCTTCATCCACAGCAAGACTTTAGCATGGTTCCATTTTCTTCAAATTCTGTCACAGAAGATAGAGTTTCCAGTGCTCGAAACCGGCCTCCACGTGTCACCCCTCCTTCCTTCTTGGTTCGGGTGGCCATGAGAATATCTAGAGCAAGATGGTTTACCTTTTTGAGAAGAGTTTTTCATTACCAAAATGGATCAAGGTCCAATCTTGGCTCCAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTTATTGCTTTGGTTGTTCAAATAACCATTACAACATTCACTTTGGCTATTTCCAAGAGGGAGAGACCTATTTGGCCTATGAGGATTTGGATTTCTGGTTATGATATTGGTGTTGTTCTTAATCTGCTGCTACTTTATGGTCGCTATCGTCAAATTTATCTCACTCAAGGAGATGCTCTCGGTGTTTCTGATATAGAACAGCAGAGAAACCATGAAGAAACCAGTGTGTGCAGGATGTCACACTTGATGAACAAGTGTAGGACTTCACTTGAGCTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGGTTTTTGACTCACGTTTTGGATCCTTTGAACAAGCTCCAAAACTGCATGTGCTCTGCATCACTCTTCTTGCTTGGAATGCAGTGTGCTACTCTTTCCCTTTTCTACTGTTTCTGCTGCTATGCTGTTTTGTGCCACTCATTAGCACCCTCCTTGGCTACAACATGAACATAGCCTCTTTTGACAAAGGAGCTTCTGAAGATCAAATTTCACAACTTCCAAGTTGGAGACATAAAGAAGGTCGTGCAAAGTCAGAGCTTGGAAATGACTCTGATGGGAGTGAAAAACTGATTGATGAAGACCAAGAATGTTGTATCTGCTTAACCAAGTATAAAGACAAAGAGGAAGTTAGACAATTGCCTTGTTCCCATGTGTTTCATCTAAAATGTGTGGATCAATGGCTAAAAATTACATCATGTTGTCCTCTTTGCAAGCAAGGATTGGAGATGTAG 1026 0.4113 MNSRCFLHPQQDFSMVPFSSNSVTEDRVSSARNRPPRVTPPSFLVRVAMRISRARWFTFLRRVFHYQNGSRSNLGSNPFNSSTWMMLEFIALVVQITITTFTLAISKRERPIWPMRIWISGYDIGVVLNLLLLYGRYRQIYLTQGDALGVSDIEQQRNHEETSVCRMSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFEQAPKLHVLCITLLAWNAVCYSFPFLLFLLLCCFVPLISTLLGYNMNIASFDKGASEDQISQLPSWRHKEGRAKSELGNDSDGSEKLIDEDQECCICLTKYKDKEEVRQLPCSHVFHLKCVDQWLKITSCCPLCKQGLEM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g03005 341 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
Viun8g03005 341 SMART ring_2 295 335 IPR001841 -
Viun8g03005 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 340 IPR013083 -
Viun8g03005 341 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 14 338 - -
Viun8g03005 341 Pfam Ring finger domain 294 336 IPR001841 -
Viun8g03005 341 SUPERFAMILY RING/U-box 286 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g03005 Viun-Chr8 37355292 37357270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g03005 35 339 C3H Transcription Factor Family AT4G26580 68.627 4.53e-146 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g03005 - - gmx:100813670 618.231