LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g02984	ATGGCTACGTGCATGTGCATGCTTGTCTTCTTCATCATCTTCATGCTCTTCTTGGGCGCTCTGAGTGAGGTGGCAGCCACACAAAACAGCGTCAGCTTCGACTTCCCTTCTTTCACTCCCAACAACAACAACATCACCCTCCTCGGCGATTCCTTTCTATGGAGCAACGGCGTCGTAAGACTCACCAACGTCGCCTCCACCTCCAGCACCGGCGCCGTCATCTACGCCTACCCCATCCCATTCTTCCACCCTCCAACCGCCACCTTCGCCTCCTTCTCCACCACCTTCACCTTCTCCATCAACAACCTCAACCCCGCCTCCTCCGGCGACGGCCTTGCCTTCTTCCTCTCCCCCAACACCGCCTCCTCCAACCTCTCCCTCTCCGCTCCACTCGGCCTCCCCTCCTCCTTCGTCGCCGTCGAGTTCGACACGCGCTTCGACTCCCGCTTCGGCGACCCTAACGAGAACCACGTCGGCTTCGACGTCGACTCCGTGAAGTCCCTCAAAACCGGTGACCCATCCTTGCACGGAATCGACCTCAAGAGCGGCAACACCATCATCACATGGATCGACTACGACGCCGGTCGAACTTCTCTCACTGTTTTCTTGAGCTATTCACTTCCGAAACCCGTCGACCCCGTCCTCTCCGTCAAGTTCAATCTTTCTCAACACTTGAGAAACCCCGTTTACATTGGATTCTCCGCTTCCACTCAAGGAATTACCGAGATTCACCAAATCCAGAGTTGGACCTTTCACACTGCTTTTGCTCCCGCAAGAACGAGGCTGCACCCTCACAACGTTTCCGTGGTGGGAACTGTACCTGTTTCAGGTTCACGTTCTGGCTCTCGGGGTTCTGCTTCTGTTTCTAGTTCAAACACTAAATTCACTTCCAAGAAGCATGATAAGAGGGTTGGCATTGGTGTGGTTGTTGCGGGATCTGTCTCTTTCTTTGTGGTTTTTTCAGTCTTGGGGTATGTCTTTGTTCGAAAATCTCGGGGTGAGAGAGAAGAAAAGTTTCAGAATGGTTTCGTGGCGTGTCCCAGGGCGTTCGATTACAAAGAGTTGAAGTCTGCGACAAGAGAGTTTCATCCGAGTAGGATCGTTGGGCACGGATCATTTGGGACGGTGTATAAGGCTTTCTTTATCTCTTCAGGAACCATCGCTGCAGTGAAAAGGTCGCGGCACTCTCACGAAGGGAAGACCGAGTTTCTGTCTGAACTTTCCATCATAGCCGGTTTGCGGCACAAGAATTTGGTTCAGCTGCAAGGTTGGTGTGTTGAGAAGGGAGAGCTATTGCTGGTGTACGAGTTTATGCCCAATGGAAGTTTAGACAAGATGCTTTACAAGGAACCTGAAGTGGGAAGGTTGTTGAGTTGGTCTCACAGGGTGAACATCGCTGTTGGGTTGGCCTCTGTGCTGGTTTACCTTCACCAAGAATGTGAGCGGAGAGTGGTTCACAGGGACATTAAAACTGGGAACATTTTGCTGGATGGAAACATGAATCCTAGGTTGGGGGATTTTGGATTGGCAAAGTTGATGGATCATGATAAGAGTCCTGTGTCCACTTTGACGGCTGGAACAATGGGGTACCTTGCCCCTGAGTATCTTCAGTACGGAAAGGCCACTGATAAATCTGATGTTTTCAGCTATGGGGTGGTTGTGCTTGAAGTGGCTTGTGGAAGGAGGCCAATTGAGAGAGAAGGGTCAAAAATGGTGAATCTGATTGAGTGGGTTTGGGGGCTGCATTCTGAGGGGAAGGTGATTGAAGCTGCTGATAAGAGGTTGAATGGGGAATTTGAGGAAGAAGAAATGAAGATGCTTTTGCTCTTGGGATTGAGTTGTGCTAACCCTGATACTTCTGGGAGGCCTTCCATGAGAAGGGTGCTTCAGATTCTGAACCATGAGGCTCCACCACTTACTGTGCCAAAAGTTAAACCAACACTCACCTTTTCTTCTGCACTTCCCCTCACTATTGAGGACATTGTTTCTGACACTGAAGAAGAGTTCAGTACCAGCAGGTCTGTGTGTGAGATCAACTTTGACTGA	2046	0.5064	MATCMCMLVFFIIFMLFLGALSEVAATQNSVSFDFPSFTPNNNNITLLGDSFLWSNGVVRLTNVASTSSTGAVIYAYPIPFFHPPTATFASFSTTFTFSINNLNPASSGDGLAFFLSPNTASSNLSLSAPLGLPSSFVAVEFDTRFDSRFGDPNENHVGFDVDSVKSLKTGDPSLHGIDLKSGNTIITWIDYDAGRTSLTVFLSYSLPKPVDPVLSVKFNLSQHLRNPVYIGFSASTQGITEIHQIQSWTFHTAFAPARTRLHPHNVSVVGTVPVSGSRSGSRGSASVSSSNTKFTSKKHDKRVGIGVVVAGSVSFFVVFSVLGYVFVRKSRGEREEKFQNGFVACPRAFDYKELKSATREFHPSRIVGHGSFGTVYKAFFISSGTIAAVKRSRHSHEGKTEFLSELSIIAGLRHKNLVQLQGWCVEKGELLLVYEFMPNGSLDKMLYKEPEVGRLLSWSHRVNIAVGLASVLVYLHQECERRVVHRDIKTGNILLDGNMNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATDKSDVFSYGVVVLEVACGRRPIEREGSKMVNLIEWVWGLHSEGKVIEAADKRLNGEFEEEEMKMLLLLGLSCANPDTSGRPSMRRVLQILNHEAPPLTVPKVKPTLTFSSALPLTIEDIVSDTEEEFSTSRSVCEINFD	681

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun8g02984	681	CDD	STKc_IRAK	368	633	-	-
	Viun8g02984	681	Gene3D	-	28	255	-	-
	Viun8g02984	681	Pfam	Protein kinase domain	363	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g02984	681	FunFam	L-type lectin-domain containing receptor kinase VIII.1	438	650	-	-
	Viun8g02984	681	Gene3D	Phosphorylase Kinase; domain 1	325	437	-	-
	Viun8g02984	681	SMART	serkin_6	362	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g02984	681	ProSiteProfiles	Protein kinase domain profile.	362	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g02984	681	FunFam	L-type lectin-domain containing receptor kinase VIII.1	327	437	-	-
	Viun8g02984	681	SUPERFAMILY	Concanavalin A-like lectins/glucanases	31	254	IPR013320	-
	Viun8g02984	681	CDD	lectin_legume_LecRK_Arcelin_ConA	31	251	IPR001220	GO:0030246
	Viun8g02984	681	SUPERFAMILY	Protein kinase-like (PK-like)	345	653	IPR011009	-
	Viun8g02984	681	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	484	496	IPR008271	GO:0004672\|GO:0006468
	Viun8g02984	681	Pfam	Legume lectin domain	31	259	IPR001220	GO:0030246
	Viun8g02984	681	MobiDBLite	consensus disorder prediction	273	294	-	-
	Viun8g02984	681	ProSitePatterns	Legume lectins beta-chain signature.	138	144	IPR019825	-
	Viun8g02984	681	ProSitePatterns	Protein kinases ATP-binding region signature.	368	391	IPR017441	GO:0005524
	Viun8g02984	681	PANTHER	-	42	637	-	-
	Viun8g02984	681	Gene3D	Transferase(Phosphotransferase) domain 1	438	651	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g02984	Viun-Chr8	37231477	37234638	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun8g02984	1	667	Receptor kinase-like Gene Family	AT5G55830	55.667	0.0	698

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Viun8g02984		Pkinase	6.2e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun8g02984	-		-	gmx:102668712	880.937