Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02974 ATGACCAACAATAATGTAAAGGAGCCCTTGCTGTCATCACTGAATGAGACTCAAAAGGCTAAACGGCTGTTAAACAAGAGAAGGTTACACCGCTCTAGGAGTGCTCCTAACACAGATCTTGTTCCTTCTGAGACACAATGCAAAGAATCAACTCCTCCAACTACGTCCATATTTCAGAATTTGCATCCAAATCACAAAAGAGTTGCTATCTACCTTGCAGTATATTTATGTGTAGGTGCTTTAATCTTCTTCCTTGTGAGGGACCAGATCAAGGGGACGAAAACAGATGGAGTTCTTGATGCTTTGTACTTCACAATTGTTACAATGACCACTGTTGGATATGGAGACCTTGTGCCAGATAGCCACCTAACAAAACTACTTGCGTGTGCCTTTGTTTTTTCTGGTATGGCATTGATCGGACTCACTGTAAGCAAAGCAGCAGATTACTTAGTTGAGAAACAGGAACTTTTGCTGGTTAAAGCTATGCACCAAAAAGTTGGTTCAACTAGAATATTAAGGGAGCTTGAGACCAATAAAACAAGATACAAACTTTTTGTAGTCTTTTTCCTCCTTTTGGTGCTCTTCACTGCAGGGATAGTTTTTCTGGTGACTGTTGAGAAACTGGATGTTATTGATGCATTCTACTGTGTTTGTTCTACCATTACAACCCTTGGTTATGGGGACAAAAGTTTCTCAACTCAAGCAGGAAGAATATTTGCTGTGTTTTGGATATTGACAGGTACTATTACTTTAGCTCAGTTTTTTCTCTACGTTGCTGAGCTAAACACTGAAATCAGACAAAAGGAGCTTGTGAAGTGGGTGCTTACAAGGAAAGTGACCAATTTGGATTTGGAGGCTGCTGATCTTGATGAGGATGGAACTGTTGGGGCTGCTGAATTTGTTATTTATAAGCTGAAAGAGATGGGGAAGATTAGTCAAGAAGATATATCACTTGTGATGCAGGAGTTTGAACAGCTAGATGTTGATGATTCTGGTACACTGTCAACTTCGGATATAACATTGGCTCAGTCATCTTAG 1038 0.4008 MTNNNVKEPLLSSLNETQKAKRLLNKRRLHRSRSAPNTDLVPSETQCKESTPPTTSIFQNLHPNHKRVAIYLAVYLCVGALIFFLVRDQIKGTKTDGVLDALYFTIVTMTTVGYGDLVPDSHLTKLLACAFVFSGMALIGLTVSKAADYLVEKQELLLVKAMHQKVGSTRILRELETNKTRYKLFVVFFLLLVLFTAGIVFLVTVEKLDVIDAFYCVCSTITTLGYGDKSFSTQAGRIFAVFWILTGTITLAQFFLYVAELNTEIRQKELVKWVLTRKVTNLDLEAADLDEDGTVGAAEFVIYKLKEMGKISQEDISLVMQEFEQLDVDDSGTLSTSDITLAQSS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02974 345 MobiDBLite consensus disorder prediction 36 54 - -
Viun8g02974 345 ProSitePatterns EF-hand calcium-binding domain. 288 300 IPR018247 -
Viun8g02974 345 ProSitePatterns EF-hand calcium-binding domain. 327 339 IPR018247 -
Viun8g02974 345 FunFam Calcium-activated outward-rectifying potassium channel 1 62 157 - -
Viun8g02974 345 MobiDBLite consensus disorder prediction 27 54 - -
Viun8g02974 345 FunFam Two-pore potassium channel 1 164 272 - -
Viun8g02974 345 SUPERFAMILY EF-hand 247 341 IPR011992 -
Viun8g02974 345 Gene3D - 62 156 - -
Viun8g02974 345 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 62 318 IPR003280 GO:0005267|GO:0016020|GO:0071805
Viun8g02974 345 Pfam Ion channel 190 261 IPR013099 -
Viun8g02974 345 Pfam Ion channel 70 151 IPR013099 -
Viun8g02974 345 SUPERFAMILY Voltage-gated potassium channels 172 281 - -
Viun8g02974 345 Gene3D - 163 274 - -
Viun8g02974 345 SUPERFAMILY Voltage-gated potassium channels 64 157 - -
Viun8g02974 345 PRINTS Two pore domain K+ channel signature 219 247 IPR003280 GO:0005267|GO:0016020|GO:0071805
Viun8g02974 345 PRINTS Two pore domain K+ channel signature 293 302 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02974 Viun-Chr8 37205625 37208065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02974 49 345 Ion Channels AT5G55630 67.881 4.67e-150 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02974 K05389 - gmx:100777388 563.148