Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02970 ATGAGTAAGATAAGGTTAATGTTTTTCTTGGTGTTGTTGTTGAAGTGTGATGGTGATACTGATAGTGATCATGCTGGAAAAGTGATTACGTGGGATGATTTCATGGTGGATGAAGAGGGTACAACATCCAACGTTGGTGGTCGAGTTATCGTGGTCGATCAAAGTGGTAACGGAGATTCAACAACGGTTCAAGCAGCAGTAGATATGGTTCCACAAAACAACACACAAAGGGTCAAGATATACATTTATCCTGGAGTTTATAGAGAAAGAGTGCATGTGCCGAAAAGCAAGCCGTTCATTTCATTAATAGGTAAACCTAACATAACTATGAATGCAAAAATAGCGGCTATAGGTAATGGCATTGGCATAGTTATTATCACAAACAGTACAAAGGCATCAGACAAAGACTCCAACGGCCAAGAAATGGGCACAATTAGTACAGCAACTGTATGGGTACAATCTGATTTTTTCTGCGCCACAGCTCTCACAATTCAGAATTTGGTAGATAAAGATGCAGATAAACGTCAAGCAGTAGCATTGCGTGTGGATGGTGATAAAGCTGTATTCTATGGAGTTAGGCTTGTGGGGGAACAAGACACCCTCCTTGATAACACAGGGATTCATTATTTCTATCGAAGTTACATTCAAGGATCTGTTGATTTTATATTTGGCAACGCTAAATCGTTGTTTCATGAGTGTGTTGTATACTCTGTAGCTGAGTTTTGGGGAGCAATTGCAGCTCATCACAGAAACTCAGAAGATGAAGACACAGGTTTTTCATTTGTAAATTGCACAATCAAAGGAACTGGTAGTGTTTTTCTTGGGAGAGCATGGGGGAACTATGCAAGAACAGTGTATTCAAACTGTGACATGGATGATGTTATTAATCCCTTGGGGTGGAGCGATTGGGATGATCCATCAAGACAAGGAACTGCAATGTTTGCGGAGTATGAATGTTCAGGAAAAGGATCAAACAGAAGTGAGAGGGTGGAATGGTCAAAAGCTCTAAGCAGAGAAGAAGCTGTGCCTTTTCTGAGCAGAGACTACATATATGGAGATGAATGGCTTACACTATAG 1077 0.4058 MSKIRLMFFLVLLLKCDGDTDSDHAGKVITWDDFMVDEEGTTSNVGGRVIVVDQSGNGDSTTVQAAVDMVPQNNTQRVKIYIYPGVYRERVHVPKSKPFISLIGKPNITMNAKIAAIGNGIGIVIITNSTKASDKDSNGQEMGTISTATVWVQSDFFCATALTIQNLVDKDADKRQAVALRVDGDKAVFYGVRLVGEQDTLLDNTGIHYFYRSYIQGSVDFIFGNAKSLFHECVVYSVAEFWGAIAAHHRNSEDEDTGFSFVNCTIKGTGSVFLGRAWGNYARTVYSNCDMDDVINPLGWSDWDDPSRQGTAMFAEYECSGKGSNRSERVEWSKALSREEAVPFLSRDYIYGDEWLTL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02970 358 Gene3D - 46 358 IPR012334 -
Viun8g02970 358 SUPERFAMILY Pectin lyase-like 47 356 IPR011050 -
Viun8g02970 358 ProSitePatterns Pectinesterase signature 2. 215 224 IPR033131 -
Viun8g02970 358 FunFam Pectinesterase 46 358 - -
Viun8g02970 358 Pfam Pectinesterase 50 353 IPR000070 GO:0030599|GO:0042545
Viun8g02970 358 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 39 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02970 Viun-Chr8 37183146 37185399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02970 48 309 Carbohydrate Esterase AT5G55590 61.742 1.23e-114 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02970 K01051 - gmx:100775690 602.438