Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02969 ATGAGTAAGATAAGGTTAATGTTTTTCTTGGTGTTGTTGTTGAAGTGTGATGGTGATACTGATAGTGATCATGCTGGAAAAGTGATTACGTGGGATGATTTCATGGTGGATGAAGAGGGTACAACATCCAACGTTGGTGGTCGAGTTATCGTGGTCGATCAAAGTGGTAACGGAGATTCAACAACGGTTCAAGCAGCAGTAGATATGGTTCCACAAAACAACACACAAAGGGTCAAGATATACATTTATCCTGGAGTTTATAGAGAAAGAGTGCATGTGCCGAAAAGCAAGCCGTTCATTTCATTAATAGGTAAACCTAACATAACTATGAATGCAAAAATAGCGGCTATAGGTAATGGCATTGGCATAGTTATTATCACAAACAGTACAAAGGCATCAGACAAAGACTCCAACGGCCAAGAAATGGGCACAATTAGTACAGCAACTGTATGGGTACAATCTGATTTTTTCTGCGCCACAGCTCTCACAATTCAGAATTTGGTAGATAAAGATGCAGATAAACGTCAAGCAGTAGCATTGCGTGTGGATGGTGATAAAGCTGTATTCTATGGAGTTAGGCTTGTGGGGGAACAAGACACCCTCCTTGATAACACAGGGATTCATTATTTCTATCGAAGTTACATTCAAGGATCTGTTGATTTTATATTTGGCAACGCTAAATCGTTGTTTCATCAGGAGTGTGTTGTATACTCTGTAGCTGAGTTTTGGGGAGCAATTGCAGCTCATCACAGAAACTCAGAAGATGAAGACACAGGTTTTTCATTTGTAAATTGCACAATCAAAGGAACTGGTAGTGTTTTTCTTGGGAGAGCATGGGGGAACTATGCAAGAACAGTGTATTCAAACTGTGACATGGATGATGTTATTAATCCCTTGGGGTGGAGCGATTGGGATGATCCATCAAGACAAGGAACTGCAATGTTTGCGGAGTATGAATGTTCAGGAAAAGGATCAAACAGAAGTGAGAGGGTGGAATGGTCAAAAGCTCTAAGCAGAGAAGAAGCTGTGCCTTTTCTGAGCAGAGACTACATATATGGAGATGAATGGCTTACACTATAG 1080 0.4065 MSKIRLMFFLVLLLKCDGDTDSDHAGKVITWDDFMVDEEGTTSNVGGRVIVVDQSGNGDSTTVQAAVDMVPQNNTQRVKIYIYPGVYRERVHVPKSKPFISLIGKPNITMNAKIAAIGNGIGIVIITNSTKASDKDSNGQEMGTISTATVWVQSDFFCATALTIQNLVDKDADKRQAVALRVDGDKAVFYGVRLVGEQDTLLDNTGIHYFYRSYIQGSVDFIFGNAKSLFHQECVVYSVAEFWGAIAAHHRNSEDEDTGFSFVNCTIKGTGSVFLGRAWGNYARTVYSNCDMDDVINPLGWSDWDDPSRQGTAMFAEYECSGKGSNRSERVEWSKALSREEAVPFLSRDYIYGDEWLTL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02969 359 Gene3D - 46 359 IPR012334 -
Viun8g02969 359 Pfam Pectinesterase 50 354 IPR000070 GO:0030599|GO:0042545
Viun8g02969 359 SUPERFAMILY Pectin lyase-like 47 357 IPR011050 -
Viun8g02969 359 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 39 358 - -
Viun8g02969 359 ProSitePatterns Pectinesterase signature 2. 215 224 IPR033131 -
Viun8g02969 359 FunFam Pectinesterase 46 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02969 Viun-Chr8 37183144 37185399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02969 48 310 Carbohydrate Esterase AT5G55590 61.887 1.54e-113 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02969 K01051 - gmx:100775690 597.816