Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02930 ATGGACGCCTCCACCGCCACCACCTCCGCCGAGCCCAGCCCAAGTTCGGAGCTCTGCCTCAACGGGGCATCCGAGGATCCGAATCGAGGTGGCTCGGGTCAGAATTCCACGGCGAGGTACAAGCTGATTGCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCCTGCATCACGATTCCTCCGGGACTGAGTCCTACGTCGTTTCTGGAATCACCGGTTCTTCTCTCCAACATGAAGGTGGAGTCTTCACCAACTACAGGGTCTCTCCGGAAGCTTCAACAAACAGTACATGGTTCTAAGGCTTCTGCTACATTTGCATTAACCACTGCATGCTTCAATACCAATACTGTTGATGACAGGAAATCAAGCTTCTTTGAGTTTAAACCACTCAACAGGTTGAATATGGTTCCTGTAGACTTCAATAACCATGTTATCAAACAATCAACTCAAGTAGAAGGTCTAGGAAAAGCACAATCATTTGTTTCCTCACCATTAGGTGAAAGTGAGATAGCAGTTCCTGCTAACGAATTAAGTCTATCATCACCTGTACAAATGGTTAGTTCTAGTCCTAGTGCTCCTGTTGATGTTGATTTGGATGACGTTAACCACAAAAGCAACACAGCTACTGGGCTTCAAGCATCACATGTTGAGGTTAGAGGCAATGGACTTTCAGTTGCAGCTGAGAAAACATCTGATGATGGATACAATTGGCGAAAGTACGGGCAAAAACTTGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCAAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATCACTGAGATAATTTACAAGGGAACACATGATCACCCCAAACCTCAACCAAGCTGCCGATACTCTACTGGTACTGTTATGTCTATTCAAGTAGAGAGATCCGATAAGGATTCTTCTTTGGCTGGCCTAGATGACAAAGCATCCTCCATGTATGGTCAGTTGTCTCATGCTGCTGAGCCCAACAGTGCTTCTGAGCCATCACCTGTAGCAACAAACGATGATGGTTTAGAGGGTGTCGGGTTTGCGTCAAACAGGATTAGTGATGACGCTGATGATGATGATCCCTTCTCAAAGCGGAGAAAAATGGAACTTGGAAATGTTGACATCACTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTTTGAGTGAGGTTGATATATTGGATGATGGGTATCGCTGGCGTAAGTATGGCCAAAAGGTGGTGAGAGGCAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCGGGTTGCCCTGTCAGAAAACATGTGGAGAGGGCATCTCATGATCCAAAAGCAGTGATAACCACATATGAGGGTAAACACAACCATGATGTACCAGCTGCAAAGAATAGCAGCCATGACATGGCAGTAGCAGCAGCTGGACAGACAAGAATTAAGTTAGAAGAAAGTGATACCATTAGCCTTGACCTTGGGATGGGAATTAGCTCAGCTGCTGAACATAGATCAAATGCACAAGGGAAAATAATGCACTCTGAATTTGGGAACACTCAAACTCACACAAGTAATTCCAATTTCAAGTTTGTTCATACTACCTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCTAATCCCTATGGTTCTAGAGACAATAGGACTGATGGTCCGGCTTTAAACCATGCCTCGTATCCTTGCCCACAGAGCATGGGAAGAATACTAATGGGTCCATGA 1755 0.4507 MDASTATTSAEPSPSSELCLNGASEDPNRGGSGQNSTARYKLIAPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVESSPTTGSLRKLQQTVHGSKASATFALTTACFNTNTVDDRKSSFFEFKPLNRLNMVPVDFNNHVIKQSTQVEGLGKAQSFVSSPLGESEIAVPANELSLSSPVQMVSSSPSAPVDVDLDDVNHKSNTATGLQASHVEVRGNGLSVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSCRYSTGTVMSIQVERSDKDSSLAGLDDKASSMYGQLSHAAEPNSASEPSPVATNDDGLEGVGFASNRISDDADDDDPFSKRRKMELGNVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAAKNSSHDMAVAAAGQTRIKLEESDTISLDLGMGISSAAEHRSNAQGKIMHSEFGNTQTHTSNSNFKFVHTTSAPVYFGVLNNSSNPYGSRDNRTDGPALNHASYPCPQSMGRILMGP 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02930 584 MobiDBLite consensus disorder prediction 327 373 - -
Viun8g02930 584 Pfam WRKY DNA -binding domain 407 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun8g02930 584 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun8g02930 584 SUPERFAMILY WRKY DNA-binding domain 227 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun8g02930 584 ProSiteProfiles WRKY domain profile. 401 466 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun8g02930 584 FunFam WRKY transcription factor 33 393 459 - -
Viun8g02930 584 SUPERFAMILY WRKY DNA-binding domain 398 466 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun8g02930 584 SMART WRKY_cls 230 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun8g02930 584 SMART WRKY_cls 406 465 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun8g02930 584 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 148 507 IPR044810 GO:0003700
Viun8g02930 584 FunFam WRKY transcription factor 220 290 - -
Viun8g02930 584 MobiDBLite consensus disorder prediction 1 36 - -
Viun8g02930 584 Gene3D WRKY domain 222 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun8g02930 584 Gene3D WRKY domain 391 467 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun8g02930 584 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun8g02930 584 MobiDBLite consensus disorder prediction 328 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02930 Viun-Chr8 36992181 36997645 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02930 43 584 WRKY Transcription Factor Family AT4G26640 55.556 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun8g02930 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02930 - - gmx:100816583 1026.16