Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02895 ATGGAGACGGAGGAGGAGCTCGTGCCCGATCCCAAACCGGAGGACCAGACCGTGCCGCTTCAGAACGGGGACTCTGACCAGCGCTGCGCCAAGAAGCCCAAGGTTGACGCCGACGCCGAATTGAAGAGAGTGGCCGAGATTGTTCTCGTTCTCTCTACCATGGCCACGGTGCGTGCGGGGAGGAAGCCTTCAGACGCTGAGGTCGAGCTCATGAGAGAGGCGCGCGCTAAGCTCGCCGGCCTCTGCCAGGGTTTGGCTCCCAAGGATATTGTGGCCAGGGAAGCAATTGGCACCGTCATCGAGGATCTCGGATTGCACTCCAAGCTTAAGGACCAGAGGCTAGGGTTTCGAACTCCCAAGATGTCTATTGCCGAGAGGTATTCCCATGCTAAGTGGAAGATGGAGGAAGCAAAGAAGTTTTCTGCACCTTCTACAACACATACATCTCAACCCTTACAATCAAACATTGGTGGACCTGTTGACAATCGTGTGCCATCACATGTTGTTCGAATTTTCCCTTCTGATAAACCAAGCCAGCCAGCAATCCCTTCTATGGGTGCCGTAGTGTCTATTCCTCCCCATGTTTCTGCAGGATCTTCTGCAGTATTGCAATACCAGTCAACTGGCAATGAAGTAAGACCACCTGTGGTTTCTGGTGTGATGCCTAGCGGTCACTTGGGGAGAAATTCGTCTTCCTTAGTATTGCCTAAAGTTGAACATCCACAGTTCAAAGTTGATGGAGGATCAAATGGGTCTTCTTATATGCTACAAGTCCAAGCAAATTCATCAGCAAACCAACCTTTGGTGAATGCTCCTGCATGGTCTATACCGACTCAAGCTGCTTCAGTAGCAAGAACTGTATCAGAAAACAAGGTGCCTGCGACTACCTCTGTGAAGGTTGAAGGAACATCTGACATAACCGTATCAAGGGCAGGGCCTCAAATAACAACAGACCCGAGCTTTAGACCATTTATCACTCCAACCGCTTCTGTAAATTTGTCTACTGTGCACCAGCCTTTGCAAGCCACGAACATTGTTCAGCCTCCTTTGATTCCCAGTCACACTGATATTGCAAAGGTTGTCCAGAAAGTGTTACAACCAAAGGTTCCCAGCCATCCCACTTGGATTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAGATGTGTGAGCTCAGTGTTCAGGAGGTTGATACTGTACTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGTCTGCAGCCCTCGGTCTTGAGAGGAATTCATAACAGAGTTGATTGGCATTGTATGAGGTGCTTGAGTATAAGTGGTGGAAAGCCTTTGCCTCCAAAGTATGGTCGTGTCATGAGATCGTCAAGCACACCGCCAAAATTGCCCTCTAATATCGGTGGTATTCAAGCTTGCTCTGAGAATAAAGCAGAGAACATAGAACCAAAGGTCTTGCAGATGGTAACAAATGGGAGCACTGTTCCAACTGTTGCCAGTGGCAATCACAATGTTGAGGTGCCATGTTACTCAAAGTTCCCTGATACCAAAGGTATACAAGGGATTGGCATTTCATCCAGTATTGAAGCTATCGATAAGAAGCCTGATCCAAACAACTCTATGAAATCTCTTGGCGCAGCTTCTAGTCCTTCTATTGGCTTGCTAGGTGAATGCTCTACTAAACAAATAAATTCTAAGGTTTTGACCAGTAAAGAGACTTCAGAACGTGAGTCTCTTCCTAAATTATCTGAGCCGGCTAAATGTGAAAGTATGCAATCATCTCAAAATTTTCAAGTGGAACAGACAATGTCAAAAGACAATGCTGAAGTATCACCAGATAAACACATTGATAGTAAAATTATGAATAATAATCAAAAGGACTCTCTTAAAGGGGAAAATTTAACTTACGATATTAAGCGTGATGACCAAGATGCTGCACTTGCAAACATTGTTGGAATTTCTGGAACTAATACTGAAGGTAGACAGGACTCAACATTATCTTCAGATGGTTCACATGCTATAGAATGGATTGGTGATGTAGTACAGCTCGTAGATGAAAAGATTTTTTACCAATCTTGTTGTGTTGATGGAGTAACGTATAGGCTACAGGGTCATGCTCTTTTTCCTACCAGTAATGGGAAACTAGCTCCTTCTAAACTCCAGTCTATGTGGGAAGATTGCAAAACTGGGTTAAAGTGGGTAAAGGTAACAAAGTGCTACTTTCCTGATGATTTGCCAGGGAATATTGGTCATCCGTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTAGCTCTATTCAAGGTCCATGTGAAGTACTTCCGTCTGATAAATTTAAACAAGAAAATGACAGGCGATGTCAGTTAGGAATTGAGGAAAGTACTAGAATACAGCCCATTTTCCTTTGCAGGTGGTTTTATGATGAATTCAAAAAATTATTTCAACCTGTAATCAGTTGA 2478 0.4423 METEEELVPDPKPEDQTVPLQNGDSDQRCAKKPKVDADAELKRVAEIVLVLSTMATVRAGRKPSDAEVELMREARAKLAGLCQGLAPKDIVAREAIGTVIEDLGLHSKLKDQRLGFRTPKMSIAERYSHAKWKMEEAKKFSAPSTTHTSQPLQSNIGGPVDNRVPSHVVRIFPSDKPSQPAIPSMGAVVSIPPHVSAGSSAVLQYQSTGNEVRPPVVSGVMPSGHLGRNSSSLVLPKVEHPQFKVDGGSNGSSYMLQVQANSSANQPLVNAPAWSIPTQAASVARTVSENKVPATTSVKVEGTSDITVSRAGPQITTDPSFRPFITPTASVNLSTVHQPLQATNIVQPPLIPSHTDIAKVVQKVLQPKVPSHPTWIPPSRDYMNKALTCQMCELSVQEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSISGGKPLPPKYGRVMRSSSTPPKLPSNIGGIQACSENKAENIEPKVLQMVTNGSTVPTVASGNHNVEVPCYSKFPDTKGIQGIGISSSIEAIDKKPDPNNSMKSLGAASSPSIGLLGECSTKQINSKVLTSKETSERESLPKLSEPAKCESMQSSQNFQVEQTMSKDNAEVSPDKHIDSKIMNNNQKDSLKGENLTYDIKRDDQDAALANIVGISGTNTEGRQDSTLSSDGSHAIEWIGDVVQLVDEKIFYQSCCVDGVTYRLQGHALFPTSNGKLAPSKLQSMWEDCKTGLKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRTEMASSIQGPCEVLPSDKFKQENDRRCQLGIEESTRIQPIFLCRWFYDEFKKLFQPVIS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02895 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 451 IPR013083 -
Viun8g02895 825 CDD BAH 696 819 - -
Viun8g02895 825 ProSiteProfiles BAH domain profile. 697 824 IPR001025 GO:0003682
Viun8g02895 825 MobiDBLite consensus disorder prediction 566 626 - -
Viun8g02895 825 MobiDBLite consensus disorder prediction 141 160 - -
Viun8g02895 825 Gene3D - 676 824 IPR043151 -
Viun8g02895 825 CDD PHD_SF 388 436 - -
Viun8g02895 825 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 22 823 - -
Viun8g02895 825 ProSiteProfiles Zinc finger PHD-type profile. 386 439 IPR019787 -
Viun8g02895 825 Pfam PHD-finger 389 437 IPR019787 -
Viun8g02895 825 SUPERFAMILY FYVE/PHD zinc finger 379 444 IPR011011 -
Viun8g02895 825 MobiDBLite consensus disorder prediction 606 620 - -
Viun8g02895 825 MobiDBLite consensus disorder prediction 586 605 - -
Viun8g02895 825 SMART PHD_3 388 437 IPR001965 -
Viun8g02895 825 MobiDBLite consensus disorder prediction 1 35 - -
Viun8g02895 825 ProSitePatterns Zinc finger PHD-type signature. 389 436 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02895 Viun-Chr8 36828411 36836882 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun8g02895 PHD 4.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02895 - - gmx:100807139 1386.32