Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02873 ATGCGGAAGGGAAGAGGAGGGGCCGCGTCGGTGGTCACGGCTGCGGCTGCGGCGGCCAACGGATCTCTTTTAAAGGAGCCACGTTACCGGGGCGTGAGAAAGAGACCGTGGGGGAGATTCGCGGCGGAGATCAGAGACCCGTTGAAGAAAGCCAGGGTTTGGTTGGGAACCTTCGATTCTGCCGAGGAAGCTGCGCGAGCCTACGACGCCGCCGCACGGACTCTCCGAGGTCCCAAGGCCAAAACAAATTTCCCTCTCTCACACCCTTTCTGCTATCCGCACCCCACCACAAGTCCTCTCTTCTACGCGGGTTTCAACGACACCAACCACACCAGCAACGTTAACAACCCTCAGAGACCCACCTCAAGTGGCATGAGCAGCACCGTCGAGTCCTTCAGTGGGCCACGCCCTCCCATCGCCGCCGCCGCCGGCACTTCCGCGACGCCGTTTTTGACCACCACGCGGAGATACCCGCGCACTCCCCCTCTGGTCCCCGAAGACTGCCATAGCGACTGCGACTCTTCCTCCTCCGTCGTCGACGACGGCGACGACAACATCGTCTCCTCGTCGTTCCGCCCTCCCCTGCCCTTTGATCTCAACGCGCCGCCGTTCGACGATGCTGCTACCGATGACGATCTCCGCTGCACTGCGCTCTGCCTCTGA 663 0.6244 MRKGRGGAASVVTAAAAAANGSLLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSHPFCYPHPTTSPLFYAGFNDTNHTSNVNNPQRPTSSGMSSTVESFSGPRPPIAAAAGTSATPFLTTTRRYPRTPPLVPEDCHSDCDSSSSVVDDGDDNIVSSSFRPPLPFDLNAPPFDDAATDDDLRCTALCL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02873 220 MobiDBLite consensus disorder prediction 152 198 - -
Viun8g02873 220 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Viun8g02873 220 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Viun8g02873 220 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Viun8g02873 220 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Viun8g02873 220 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Viun8g02873 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 185 - -
Viun8g02873 220 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Viun8g02873 220 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Viun8g02873 220 MobiDBLite consensus disorder prediction 109 133 - -
Viun8g02873 220 FunFam Ethylene-responsive transcription factor 2 28 86 - -
Viun8g02873 220 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Viun8g02873 220 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02873 Viun-Chr8 36646372 36647617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02873 1 220 AP2-EREBP Transcription Factor Family AT1G50640 58.723 4.90e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun8g02873 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02873 K09286 - gmx:100803943 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02873 8 36646372 36647617 Viun8g02873 8 36646372 36647617 ECH
Viun6g00822 6 18004493 18005792 Viun8g02873 8 36646372 36647617 PCT