Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun8g02873 | ATGCGGAAGGGAAGAGGAGGGGCCGCGTCGGTGGTCACGGCTGCGGCTGCGGCGGCCAACGGATCTCTTTTAAAGGAGCCACGTTACCGGGGCGTGAGAAAGAGACCGTGGGGGAGATTCGCGGCGGAGATCAGAGACCCGTTGAAGAAAGCCAGGGTTTGGTTGGGAACCTTCGATTCTGCCGAGGAAGCTGCGCGAGCCTACGACGCCGCCGCACGGACTCTCCGAGGTCCCAAGGCCAAAACAAATTTCCCTCTCTCACACCCTTTCTGCTATCCGCACCCCACCACAAGTCCTCTCTTCTACGCGGGTTTCAACGACACCAACCACACCAGCAACGTTAACAACCCTCAGAGACCCACCTCAAGTGGCATGAGCAGCACCGTCGAGTCCTTCAGTGGGCCACGCCCTCCCATCGCCGCCGCCGCCGGCACTTCCGCGACGCCGTTTTTGACCACCACGCGGAGATACCCGCGCACTCCCCCTCTGGTCCCCGAAGACTGCCATAGCGACTGCGACTCTTCCTCCTCCGTCGTCGACGACGGCGACGACAACATCGTCTCCTCGTCGTTCCGCCCTCCCCTGCCCTTTGATCTCAACGCGCCGCCGTTCGACGATGCTGCTACCGATGACGATCTCCGCTGCACTGCGCTCTGCCTCTGA | 663 | 0.6244 | MRKGRGGAASVVTAAAAAANGSLLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSHPFCYPHPTTSPLFYAGFNDTNHTSNVNNPQRPTSSGMSSTVESFSGPRPPIAAAAGTSATPFLTTTRRYPRTPPLVPEDCHSDCDSSSSVVDDGDDNIVSSSFRPPLPFDLNAPPFDDAATDDDLRCTALCL | 220 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun8g02873 | 220 | MobiDBLite | consensus disorder prediction | 152 | 198 | - | - | |
Viun8g02873 | 220 | Gene3D | AP2/ERF domain | 28 | 87 | IPR036955 | GO:0003700|GO:0006355 | |
Viun8g02873 | 220 | CDD | AP2 | 27 | 87 | IPR001471 | GO:0003700|GO:0006355 | |
Viun8g02873 | 220 | SMART | rav1_2 | 28 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Viun8g02873 | 220 | Pfam | AP2 domain | 27 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Viun8g02873 | 220 | SUPERFAMILY | DNA-binding domain | 28 | 87 | IPR016177 | GO:0003677 | |
Viun8g02873 | 220 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 22 | 185 | - | - | |
Viun8g02873 | 220 | PRINTS | Ethylene responsive element binding protein signature | 29 | 40 | IPR001471 | GO:0003700|GO:0006355 | |
Viun8g02873 | 220 | PRINTS | Ethylene responsive element binding protein signature | 51 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Viun8g02873 | 220 | MobiDBLite | consensus disorder prediction | 109 | 133 | - | - | |
Viun8g02873 | 220 | FunFam | Ethylene-responsive transcription factor 2 | 28 | 86 | - | - | |
Viun8g02873 | 220 | ProSiteProfiles | AP2/ERF domain profile. | 28 | 85 | IPR001471 | GO:0003700|GO:0006355 | |
Viun8g02873 | 220 | MobiDBLite | consensus disorder prediction | 109 | 136 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun8g02873 | Viun-Chr8 | 36646372 | 36647617 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun8g02873 | 1 | 220 | AP2-EREBP Transcription Factor Family | AT1G50640 | 58.723 | 4.90e-54 | 171 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Viun8g02873 | AP2 | 1.4e-15 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun8g02873 | K09286 | - | gmx:100803943 | 313.923 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun8g02873 | 8 | 36646372 | 36647617 | Viun8g02873 | 8 | 36646372 | 36647617 | ECH | |
Viun6g00822 | 6 | 18004493 | 18005792 | Viun8g02873 | 8 | 36646372 | 36647617 | PCT |