Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02864 ATGGTTGAAGACGTGAATACTGAAGAAAGGCCAAAGTTCAGAGATATTAGACGTTATTTCTGCCAGTACTGCGGTATCTGCAGATCCAAGAAAACCCTAATTACCTCTCACATCAATTCGCAACACAAGGAAGAAGATGAGAAGGCTAGAAAAGAAAGAGATCCTGAAGCGGAGTCTTCAAAATCCAACACCTGCGGGGAATGTGGTGCCACTTTCAAGAAACACGCATATTTGTTGCAGCACATGCAAAGTCATTCGCTTGAGAGGCCGTTTGTGTGTACTGTTGATGATTGTCAAGCTAGTTATCGAAGGAAGGACCACCTGACTAGGCACCTTCTACTACATGAAGGGAAGACATTCAACTGCCCTGTTGTGAACTGCAACATTGAGTTCTCTTTGCAAGGCAATATGAAAAGACACGTTGAGGAGATTCACGACGGCAGTTCCACTGCCGCTGCTGACAAAAGTCACAAACAACATGTGTGTCCAGAGATTGGCTGTGGAAAGGTTTTCAGATTTTCTTCACAGCTAAAAAAGCATGAAGATTCCCATGTTAAGCTGGAATCAGTAGATGTGGTGTGCTTAGAACCTGGTTGCATGAAGCATTTTGCTAATGTCCAGTGCCTTAAAGCTCATGTAAATTCCTCCCATCAATATATGAGCTGTGACATTTGTGGGTCTAAGCAACTGAAGAAGAATATTAAGCGTCACCTTCGTTCCCATGAAGCTGACACCAGTTCCTCGGAGACCTTTCAATGCGAGTTTAAGGGTTGCAGCTGCACATTCTCTAAAAAATCTAATCTTGATAAGCATAAGAAGGCTGTGCACCTTCAAGAAAAACCTTTTCGGTGTGGGTTTCCTGAATGTGGCATGAGATTTGCTTACAAACATGTGCGGGATAATCACGAAAAAACTGCTAAACATGTTTTTACCCTCGGTGATTTCGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCAAGGGGAGGGAGGAAGAGAAAATGTCCTACTGTTGAAATGTTAATCAGGAAGAGGGTTACTCCACCTAGTCAATTGGAGGATTGGTTATTTATGCAGGACAGAGAGTAG 1086 0.4309 MVEDVNTEERPKFRDIRRYFCQYCGICRSKKTLITSHINSQHKEEDEKARKERDPEAESSKSNTCGECGATFKKHAYLLQHMQSHSLERPFVCTVDDCQASYRRKDHLTRHLLLHEGKTFNCPVVNCNIEFSLQGNMKRHVEEIHDGSSTAAADKSHKQHVCPEIGCGKVFRFSSQLKKHEDSHVKLESVDVVCLEPGCMKHFANVQCLKAHVNSSHQYMSCDICGSKQLKKNIKRHLRSHEADTSSSETFQCEFKGCSCTFSKKSNLDKHKKAVHLQEKPFRCGFPECGMRFAYKHVRDNHEKTAKHVFTLGDFEEADEEFRSRPRGGRKRKCPTVEMLIRKRVTPPSQLEDWLFMQDRE 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02864 361 ProSitePatterns Zinc finger C2H2 type domain signature. 284 308 IPR013087 -
Viun8g02864 361 Gene3D Classic Zinc Finger 5 91 - -
Viun8g02864 361 MobiDBLite consensus disorder prediction 38 62 - -
Viun8g02864 361 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
Viun8g02864 361 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Viun8g02864 361 Gene3D Classic Zinc Finger 92 117 - -
Viun8g02864 361 SMART c2h2final6 192 217 IPR013087 -
Viun8g02864 361 SMART c2h2final6 63 85 IPR013087 -
Viun8g02864 361 SMART c2h2final6 120 145 IPR013087 -
Viun8g02864 361 SMART c2h2final6 91 115 IPR013087 -
Viun8g02864 361 SMART c2h2final6 282 308 IPR013087 -
Viun8g02864 361 SMART c2h2final6 220 241 IPR013087 -
Viun8g02864 361 SMART c2h2final6 19 42 IPR013087 -
Viun8g02864 361 SMART c2h2final6 251 276 IPR013087 -
Viun8g02864 361 SMART c2h2final6 160 184 IPR013087 -
Viun8g02864 361 SUPERFAMILY beta-beta-alpha zinc fingers 101 148 IPR036236 -
Viun8g02864 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 120 IPR013087 -
Viun8g02864 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 150 IPR013087 -
Viun8g02864 361 SUPERFAMILY beta-beta-alpha zinc fingers 235 292 IPR036236 -
Viun8g02864 361 Gene3D Classic Zinc Finger 118 156 - -
Viun8g02864 361 PANTHER ZINC FINGER PROTEIN 7 349 - -
Viun8g02864 361 ProSitePatterns Zinc finger C2H2 type domain signature. 122 145 IPR013087 -
Viun8g02864 361 SUPERFAMILY beta-beta-alpha zinc fingers 157 186 IPR036236 -
Viun8g02864 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 281 IPR013087 -
Viun8g02864 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 189 IPR013087 -
Viun8g02864 361 ProSitePatterns Zinc finger C2H2 type domain signature. 253 276 IPR013087 -
Viun8g02864 361 MobiDBLite consensus disorder prediction 38 60 - -
Viun8g02864 361 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Viun8g02864 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Viun8g02864 361 SUPERFAMILY beta-beta-alpha zinc fingers 62 115 IPR036236 -
Viun8g02864 361 Pfam Zinc finger, C2H2 type 91 115 IPR013087 -
Viun8g02864 361 Pfam Zinc finger, C2H2 type 64 85 IPR013087 -
Viun8g02864 361 Pfam Zinc finger, C2H2 type 160 184 IPR013087 -
Viun8g02864 361 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Viun8g02864 361 Gene3D Classic Zinc Finger 246 326 - -
Viun8g02864 361 Gene3D Classic Zinc Finger 157 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02864 Viun-Chr8 36599623 36602050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02864 87 311 C2H2 Transcription Factor Family AT1G72050 51.264 2.01e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun8g02864 zf-C2H2 0.00077 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02864 K09191 - gmx:100801812 660.603